Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0381

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0380 and nhaC-1 are separated by 47 nucleotidesnhaC-1 and DVU0382 are separated by 81 nucleotidesDVU0382 and DVU0383 are separated by 180 nucleotides DVU0380: DVU0380 - sulfatase, putative (TIGR), at 429,501 to 431,063 DVU0380 DVU0381: nhaC-1 - Na+/H+ antiporter NhaC (TIGR), at 431,111 to 432,502 nhaC-1 DVU0382: DVU0382 - hypothetical protein (TIGR), at 432,584 to 432,883 DVU0382 DVU0383: DVU0383 - hypothetical protein (TIGR), at 433,064 to 433,453 DVU0383 Position (kb) 431 432 433Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 430.115 kb on + strand, within DVU0380at 430.115 kb on + strand, within DVU0380at 430.123 kb on - strand, within DVU0380at 430.123 kb on - strand, within DVU0380at 430.123 kb on - strand, within DVU0380at 430.123 kb on - strand, within DVU0380at 430.123 kb on - strand, within DVU0380at 430.137 kb on + strand, within DVU0380at 430.137 kb on + strand, within DVU0380at 430.169 kb on - strand, within DVU0380at 430.298 kb on - strand, within DVU0380at 430.368 kb on - strand, within DVU0380at 430.417 kb on - strand, within DVU0380at 430.607 kb on + strand, within DVU0380at 430.624 kb on + strand, within DVU0380at 430.624 kb on + strand, within DVU0380at 430.632 kb on - strand, within DVU0380at 430.632 kb on - strand, within DVU0380at 430.636 kb on + strand, within DVU0380at 430.636 kb on + strand, within DVU0380at 430.636 kb on + strand, within DVU0380at 430.644 kb on - strand, within DVU0380at 430.644 kb on - strand, within DVU0380at 430.737 kb on - strand, within DVU0380at 430.761 kb on + strand, within DVU0380at 430.767 kb on + strand, within DVU0380at 430.769 kb on - strand, within DVU0380at 430.770 kb on - strand, within DVU0380at 430.777 kb on + strand, within DVU0380at 430.846 kb on + strand, within DVU0380at 430.854 kb on - strand, within DVU0380at 430.854 kb on - strand, within DVU0380at 431.014 kb on + strandat 431.109 kb on + strandat 431.112 kb on - strandat 431.162 kb on + strandat 431.198 kb on + strandat 431.207 kb on - strandat 431.291 kb on - strand, within nhaC-1at 431.296 kb on - strand, within nhaC-1at 431.299 kb on - strand, within nhaC-1at 431.340 kb on + strand, within nhaC-1at 431.340 kb on + strand, within nhaC-1at 431.466 kb on - strand, within nhaC-1at 431.468 kb on + strand, within nhaC-1at 431.483 kb on + strand, within nhaC-1at 431.551 kb on - strand, within nhaC-1at 431.607 kb on + strand, within nhaC-1at 431.645 kb on - strand, within nhaC-1at 431.670 kb on + strand, within nhaC-1at 431.670 kb on + strand, within nhaC-1at 431.670 kb on + strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.769 kb on - strand, within nhaC-1at 431.795 kb on + strand, within nhaC-1at 431.813 kb on + strand, within nhaC-1at 431.821 kb on - strand, within nhaC-1at 431.821 kb on - strand, within nhaC-1at 431.823 kb on + strand, within nhaC-1at 431.831 kb on - strand, within nhaC-1at 431.831 kb on - strand, within nhaC-1at 431.867 kb on + strand, within nhaC-1at 431.906 kb on + strand, within nhaC-1at 431.911 kb on + strand, within nhaC-1at 431.911 kb on + strand, within nhaC-1at 431.916 kb on + strand, within nhaC-1at 431.924 kb on - strand, within nhaC-1at 431.928 kb on + strand, within nhaC-1at 431.928 kb on + strand, within nhaC-1at 431.984 kb on + strand, within nhaC-1at 432.053 kb on + strand, within nhaC-1at 432.053 kb on + strand, within nhaC-1at 432.061 kb on - strand, within nhaC-1at 432.061 kb on - strand, within nhaC-1at 432.083 kb on - strand, within nhaC-1at 432.088 kb on - strand, within nhaC-1at 432.096 kb on + strand, within nhaC-1at 432.152 kb on - strand, within nhaC-1at 432.183 kb on - strand, within nhaC-1at 432.206 kb on - strand, within nhaC-1at 432.305 kb on + strand, within nhaC-1at 432.337 kb on + strand, within nhaC-1at 432.340 kb on - strand, within nhaC-1at 432.389 kb on - strandat 432.463 kb on - strandat 432.660 kb on + strand, within DVU0382at 432.713 kb on + strand, within DVU0382at 432.715 kb on + strand, within DVU0382at 432.955 kb on - strandat 432.960 kb on + strandat 432.968 kb on - strandat 432.994 kb on - strandat 432.996 kb on - strandat 433.077 kb on + strandat 433.079 kb on + strandat 433.102 kb on + strandat 433.129 kb on - strand, within DVU0383at 433.152 kb on - strand, within DVU0383at 433.224 kb on - strand, within DVU0383at 433.235 kb on + strand, within DVU0383at 433.235 kb on + strand, within DVU0383at 433.240 kb on + strand, within DVU0383at 433.245 kb on + strand, within DVU0383at 433.248 kb on - strand, within DVU0383at 433.248 kb on - strand, within DVU0383at 433.253 kb on - strand, within DVU0383at 433.307 kb on + strand, within DVU0383at 433.315 kb on - strand, within DVU0383at 433.317 kb on + strand, within DVU0383at 433.332 kb on + strand, within DVU0383at 433.351 kb on - strand, within DVU0383at 433.376 kb on - strand, within DVU0383at 433.388 kb on - strand, within DVU0383at 433.403 kb on - strand, within DVU0383at 433.446 kb on + strandat 433.446 kb on + strandat 433.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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430,115 + DVU0380 0.39 +0.3
430,115 + DVU0380 0.39 +0.6
430,123 - DVU0380 0.40 +0.5
430,123 - DVU0380 0.40 -0.4
430,123 - DVU0380 0.40 -0.3
430,123 - DVU0380 0.40 +0.2
430,123 - DVU0380 0.40 +0.4
430,137 + DVU0380 0.41 -4.2
430,137 + DVU0380 0.41 -0.0
430,169 - DVU0380 0.43 +0.5
430,298 - DVU0380 0.51 -3.6
430,368 - DVU0380 0.55 -2.7
430,417 - DVU0380 0.59 -2.9
430,607 + DVU0380 0.71 -3.8
430,624 + DVU0380 0.72 -0.8
430,624 + DVU0380 0.72 -0.2
430,632 - DVU0380 0.72 -3.6
430,632 - DVU0380 0.72 +0.6
430,636 + DVU0380 0.73 -0.1
430,636 + DVU0380 0.73 -0.0
430,636 + DVU0380 0.73 -0.4
430,644 - DVU0380 0.73 +0.5
430,644 - DVU0380 0.73 +0.2
430,737 - DVU0380 0.79 +0.8
430,761 + DVU0380 0.81 -0.4
430,767 + DVU0380 0.81 -0.9
430,769 - DVU0380 0.81 -0.2
430,770 - DVU0380 0.81 -0.3
430,777 + DVU0380 0.82 -0.0
430,846 + DVU0380 0.86 +0.4
430,854 - DVU0380 0.87 +0.3
430,854 - DVU0380 0.87 -3.2
431,014 + +0.0
431,109 + +0.2
431,112 - +0.8
431,162 + -0.7
431,198 + +0.6
431,207 - +0.8
431,291 - nhaC-1 DVU0381 0.13 -0.2
431,296 - nhaC-1 DVU0381 0.13 -0.1
431,299 - nhaC-1 DVU0381 0.14 -0.5
431,340 + nhaC-1 DVU0381 0.16 -0.2
431,340 + nhaC-1 DVU0381 0.16 -2.8
431,466 - nhaC-1 DVU0381 0.26 -0.4
431,468 + nhaC-1 DVU0381 0.26 +0.1
431,483 + nhaC-1 DVU0381 0.27 -0.3
431,551 - nhaC-1 DVU0381 0.32 -0.4
431,607 + nhaC-1 DVU0381 0.36 -0.2
431,645 - nhaC-1 DVU0381 0.38 +0.5
431,670 + nhaC-1 DVU0381 0.40 -4.4
431,670 + nhaC-1 DVU0381 0.40 -0.0
431,670 + nhaC-1 DVU0381 0.40 -0.0
431,678 - nhaC-1 DVU0381 0.41 -0.1
431,678 - nhaC-1 DVU0381 0.41 -0.2
431,678 - nhaC-1 DVU0381 0.41 -0.4
431,678 - nhaC-1 DVU0381 0.41 +0.0
431,769 - nhaC-1 DVU0381 0.47 -0.1
431,795 + nhaC-1 DVU0381 0.49 -3.2
431,813 + nhaC-1 DVU0381 0.50 +1.8
431,821 - nhaC-1 DVU0381 0.51 -5.6
431,821 - nhaC-1 DVU0381 0.51 -0.3
431,823 + nhaC-1 DVU0381 0.51 -0.3
431,831 - nhaC-1 DVU0381 0.52 -2.5
431,831 - nhaC-1 DVU0381 0.52 +0.9
431,867 + nhaC-1 DVU0381 0.54 -0.5
431,906 + nhaC-1 DVU0381 0.57 -0.2
431,911 + nhaC-1 DVU0381 0.57 -0.0
431,911 + nhaC-1 DVU0381 0.57 -0.5
431,916 + nhaC-1 DVU0381 0.58 -0.1
431,924 - nhaC-1 DVU0381 0.58 +2.1
431,928 + nhaC-1 DVU0381 0.59 -0.2
431,928 + nhaC-1 DVU0381 0.59 -0.2
431,984 + nhaC-1 DVU0381 0.63 -0.6
432,053 + nhaC-1 DVU0381 0.68 -0.1
432,053 + nhaC-1 DVU0381 0.68 -3.0
432,061 - nhaC-1 DVU0381 0.68 +0.8
432,061 - nhaC-1 DVU0381 0.68 -2.5
432,083 - nhaC-1 DVU0381 0.70 -2.9
432,088 - nhaC-1 DVU0381 0.70 -0.4
432,096 + nhaC-1 DVU0381 0.71 -0.3
432,152 - nhaC-1 DVU0381 0.75 -2.5
432,183 - nhaC-1 DVU0381 0.77 -2.5
432,206 - nhaC-1 DVU0381 0.79 -0.5
432,305 + nhaC-1 DVU0381 0.86 +0.4
432,337 + nhaC-1 DVU0381 0.88 -2.9
432,340 - nhaC-1 DVU0381 0.88 -0.8
432,389 - -3.2
432,463 - +0.5
432,660 + DVU0382 0.25 -0.2
432,713 + DVU0382 0.43 +0.7
432,715 + DVU0382 0.44 +0.3
432,955 - -0.0
432,960 + -0.1
432,968 - -0.2
432,994 - +0.6
432,996 - +0.2
433,077 + +0.3
433,079 + -0.1
433,102 + -0.1
433,129 - DVU0383 0.17 -0.2
433,152 - DVU0383 0.23 -3.3
433,224 - DVU0383 0.41 -0.3
433,235 + DVU0383 0.44 -0.2
433,235 + DVU0383 0.44 +0.6
433,240 + DVU0383 0.45 +0.2
433,245 + DVU0383 0.46 +1.2
433,248 - DVU0383 0.47 -0.1
433,248 - DVU0383 0.47 -0.0
433,253 - DVU0383 0.48 +0.4
433,307 + DVU0383 0.62 -0.1
433,315 - DVU0383 0.64 -0.9
433,317 + DVU0383 0.65 +0.9
433,332 + DVU0383 0.69 -0.2
433,351 - DVU0383 0.74 +0.3
433,376 - DVU0383 0.80 +0.6
433,388 - DVU0383 0.83 -4.1
433,403 - DVU0383 0.87 -0.5
433,446 + -0.2
433,446 + +0.0
433,489 + -0.3

Or see this region's nucleotide sequence