Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0374

Experiment: MoLS4 with L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0373 and DVU0374 are separated by 204 nucleotidesDVU0374 and DVU0375 are separated by 84 nucleotides DVU0373: DVU0373 - CoA-binding domain protein (TIGR), at 420,886 to 423,198 DVU0373 DVU0374: DVU0374 - pyruvate ferredoxin/flavodoxin oxidoreductase family protein (TIGR), at 423,403 to 425,901 DVU0374 DVU0375: DVU0375 - Glu/Leu/Phe/Val dehydrogenase family protein (TIGR), at 425,986 to 427,215 DVU0375 Position (kb) 423 424 425 426Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 422.409 kb on + strand, within DVU0373at 422.409 kb on + strand, within DVU0373at 422.409 kb on + strand, within DVU0373at 422.417 kb on - strand, within DVU0373at 422.467 kb on + strand, within DVU0373at 422.468 kb on + strand, within DVU0373at 422.706 kb on - strand, within DVU0373at 422.725 kb on + strand, within DVU0373at 422.731 kb on - strand, within DVU0373at 422.733 kb on - strand, within DVU0373at 422.733 kb on - strand, within DVU0373at 422.741 kb on + strand, within DVU0373at 422.791 kb on - strand, within DVU0373at 422.825 kb on + strand, within DVU0373at 422.834 kb on + strand, within DVU0373at 422.858 kb on + strand, within DVU0373at 422.858 kb on + strand, within DVU0373at 422.866 kb on - strand, within DVU0373at 422.887 kb on - strand, within DVU0373at 422.942 kb on - strand, within DVU0373at 422.980 kb on - strandat 423.006 kb on + strandat 423.016 kb on + strandat 423.016 kb on + strandat 423.087 kb on + strandat 423.095 kb on - strandat 423.198 kb on - strandat 423.241 kb on + strandat 423.291 kb on - strandat 423.349 kb on - strandat 423.349 kb on - strandat 423.349 kb on - strandat 423.349 kb on - strandat 423.373 kb on - strandat 423.386 kb on + strandat 423.386 kb on + strandat 423.490 kb on - strandat 423.526 kb on + strandat 423.582 kb on + strandat 423.582 kb on + strandat 423.590 kb on - strandat 423.590 kb on - strandat 423.590 kb on - strandat 423.590 kb on - strandat 423.590 kb on - strandat 423.601 kb on - strandat 423.601 kb on - strandat 423.678 kb on + strand, within DVU0374at 423.688 kb on - strand, within DVU0374at 423.815 kb on - strand, within DVU0374at 423.815 kb on - strand, within DVU0374at 423.859 kb on + strand, within DVU0374at 423.867 kb on - strand, within DVU0374at 423.867 kb on - strand, within DVU0374at 423.867 kb on - strand, within DVU0374at 423.872 kb on - strand, within DVU0374at 423.889 kb on + strand, within DVU0374at 424.081 kb on - strand, within DVU0374at 424.115 kb on + strand, within DVU0374at 424.115 kb on + strand, within DVU0374at 424.115 kb on + strand, within DVU0374at 424.138 kb on + strand, within DVU0374at 424.214 kb on + strand, within DVU0374at 424.242 kb on + strand, within DVU0374at 424.242 kb on + strand, within DVU0374at 424.242 kb on + strand, within DVU0374at 424.242 kb on + strand, within DVU0374at 424.242 kb on + strand, within DVU0374at 424.242 kb on + strand, within DVU0374at 424.250 kb on - strand, within DVU0374at 424.250 kb on - strand, within DVU0374at 424.365 kb on - strand, within DVU0374at 424.365 kb on - strand, within DVU0374at 424.475 kb on + strand, within DVU0374at 424.484 kb on + strand, within DVU0374at 424.489 kb on + strand, within DVU0374at 424.509 kb on - strand, within DVU0374at 424.659 kb on - strand, within DVU0374at 424.717 kb on + strand, within DVU0374at 424.717 kb on + strand, within DVU0374at 424.725 kb on - strand, within DVU0374at 424.825 kb on + strand, within DVU0374at 424.833 kb on - strand, within DVU0374at 424.833 kb on - strand, within DVU0374at 424.833 kb on - strand, within DVU0374at 424.833 kb on - strand, within DVU0374at 424.833 kb on - strand, within DVU0374at 424.855 kb on + strand, within DVU0374at 424.881 kb on - strand, within DVU0374at 424.903 kb on + strand, within DVU0374at 424.918 kb on - strand, within DVU0374at 424.958 kb on + strand, within DVU0374at 425.004 kb on + strand, within DVU0374at 425.007 kb on - strand, within DVU0374at 425.010 kb on + strand, within DVU0374at 425.071 kb on + strand, within DVU0374at 425.076 kb on + strand, within DVU0374at 425.153 kb on - strand, within DVU0374at 425.153 kb on - strand, within DVU0374at 425.158 kb on + strand, within DVU0374at 425.203 kb on + strand, within DVU0374at 425.203 kb on + strand, within DVU0374at 425.203 kb on + strand, within DVU0374at 425.203 kb on + strand, within DVU0374at 425.203 kb on + strand, within DVU0374at 425.211 kb on - strand, within DVU0374at 425.211 kb on - strand, within DVU0374at 425.270 kb on + strand, within DVU0374at 425.313 kb on - strand, within DVU0374at 425.347 kb on + strand, within DVU0374at 425.370 kb on + strand, within DVU0374at 425.399 kb on + strand, within DVU0374at 425.451 kb on + strand, within DVU0374at 425.466 kb on + strand, within DVU0374at 425.574 kb on + strand, within DVU0374at 425.653 kb on + strandat 425.661 kb on - strandat 425.731 kb on + strandat 425.738 kb on + strandat 425.739 kb on - strandat 425.788 kb on + strandat 425.823 kb on - strandat 425.823 kb on - strandat 425.840 kb on - strandat 425.884 kb on - strandat 425.906 kb on + strandat 425.907 kb on - strandat 425.911 kb on + strandat 425.979 kb on + strandat 425.996 kb on + strandat 426.019 kb on - strandat 426.019 kb on - strandat 426.037 kb on + strandat 426.074 kb on - strandat 426.297 kb on + strand, within DVU0375at 426.298 kb on - strand, within DVU0375at 426.365 kb on - strand, within DVU0375at 426.452 kb on + strand, within DVU0375at 426.460 kb on - strand, within DVU0375at 426.490 kb on - strand, within DVU0375at 426.529 kb on - strand, within DVU0375at 426.549 kb on + strand, within DVU0375at 426.552 kb on - strand, within DVU0375at 426.605 kb on + strand, within DVU0375at 426.614 kb on + strand, within DVU0375at 426.622 kb on - strand, within DVU0375at 426.678 kb on + strand, within DVU0375at 426.779 kb on - strand, within DVU0375at 426.782 kb on + strand, within DVU0375at 426.783 kb on + strand, within DVU0375at 426.816 kb on - strand, within DVU0375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
remove
422,409 + DVU0373 0.66 +0.1
422,409 + DVU0373 0.66 +0.5
422,409 + DVU0373 0.66 -0.3
422,417 - DVU0373 0.66 +0.2
422,467 + DVU0373 0.68 -0.6
422,468 + DVU0373 0.68 -2.5
422,706 - DVU0373 0.79 +0.2
422,725 + DVU0373 0.80 -0.5
422,731 - DVU0373 0.80 -1.3
422,733 - DVU0373 0.80 -2.8
422,733 - DVU0373 0.80 -0.3
422,741 + DVU0373 0.80 -0.6
422,791 - DVU0373 0.82 -0.0
422,825 + DVU0373 0.84 +1.8
422,834 + DVU0373 0.84 -1.0
422,858 + DVU0373 0.85 -0.2
422,858 + DVU0373 0.85 +0.3
422,866 - DVU0373 0.86 -0.5
422,887 - DVU0373 0.87 -3.4
422,942 - DVU0373 0.89 +0.5
422,980 - -3.2
423,006 + -3.8
423,016 + +1.1
423,016 + +0.3
423,087 + -0.4
423,095 - -3.8
423,198 - +0.1
423,241 + -0.5
423,291 - -0.1
423,349 - +0.1
423,349 - -2.0
423,349 - -3.7
423,349 - -0.5
423,373 - -0.5
423,386 + -0.4
423,386 + +0.4
423,490 - -0.8
423,526 + +0.4
423,582 + -0.2
423,582 + +0.7
423,590 - +0.2
423,590 - -1.2
423,590 - -0.3
423,590 - +0.3
423,590 - -3.1
423,601 - -2.1
423,601 - -3.2
423,678 + DVU0374 0.11 -0.5
423,688 - DVU0374 0.11 -0.6
423,815 - DVU0374 0.16 +0.0
423,815 - DVU0374 0.16 -3.4
423,859 + DVU0374 0.18 -0.3
423,867 - DVU0374 0.19 -0.9
423,867 - DVU0374 0.19 +0.5
423,867 - DVU0374 0.19 -0.3
423,872 - DVU0374 0.19 -2.8
423,889 + DVU0374 0.19 -0.9
424,081 - DVU0374 0.27 +0.2
424,115 + DVU0374 0.28 -0.4
424,115 + DVU0374 0.28 -3.8
424,115 + DVU0374 0.28 -4.6
424,138 + DVU0374 0.29 -0.4
424,214 + DVU0374 0.32 +0.0
424,242 + DVU0374 0.34 -0.4
424,242 + DVU0374 0.34 -3.4
424,242 + DVU0374 0.34 -0.0
424,242 + DVU0374 0.34 +0.1
424,242 + DVU0374 0.34 +0.0
424,242 + DVU0374 0.34 -0.1
424,250 - DVU0374 0.34 -0.3
424,250 - DVU0374 0.34 -0.5
424,365 - DVU0374 0.38 +0.4
424,365 - DVU0374 0.38 -0.5
424,475 + DVU0374 0.43 +0.3
424,484 + DVU0374 0.43 +0.1
424,489 + DVU0374 0.43 -3.2
424,509 - DVU0374 0.44 -0.3
424,659 - DVU0374 0.50 -0.3
424,717 + DVU0374 0.53 -0.3
424,717 + DVU0374 0.53 -4.0
424,725 - DVU0374 0.53 -0.3
424,825 + DVU0374 0.57 -3.3
424,833 - DVU0374 0.57 -1.9
424,833 - DVU0374 0.57 -1.1
424,833 - DVU0374 0.57 +0.5
424,833 - DVU0374 0.57 -0.5
424,833 - DVU0374 0.57 -1.5
424,855 + DVU0374 0.58 +0.2
424,881 - DVU0374 0.59 +1.0
424,903 + DVU0374 0.60 -3.1
424,918 - DVU0374 0.61 -1.7
424,958 + DVU0374 0.62 -0.4
425,004 + DVU0374 0.64 +0.9
425,007 - DVU0374 0.64 -3.9
425,010 + DVU0374 0.64 -3.0
425,071 + DVU0374 0.67 -0.3
425,076 + DVU0374 0.67 -0.2
425,153 - DVU0374 0.70 -0.0
425,153 - DVU0374 0.70 -0.4
425,158 + DVU0374 0.70 -0.5
425,203 + DVU0374 0.72 -0.6
425,203 + DVU0374 0.72 -1.0
425,203 + DVU0374 0.72 -1.1
425,203 + DVU0374 0.72 -0.5
425,203 + DVU0374 0.72 -0.3
425,211 - DVU0374 0.72 -0.7
425,211 - DVU0374 0.72 -1.5
425,270 + DVU0374 0.75 +0.2
425,313 - DVU0374 0.76 -0.3
425,347 + DVU0374 0.78 +0.0
425,370 + DVU0374 0.79 +0.4
425,399 + DVU0374 0.80 -0.2
425,451 + DVU0374 0.82 +0.2
425,466 + DVU0374 0.83 +0.3
425,574 + DVU0374 0.87 -3.8
425,653 + -0.7
425,661 - -3.1
425,731 + -0.1
425,738 + -0.3
425,739 - -2.0
425,788 + -0.5
425,823 - -0.0
425,823 - -0.0
425,840 - -0.1
425,884 - -0.8
425,906 + -2.6
425,907 - -0.5
425,911 + -0.1
425,979 + +1.4
425,996 + +0.3
426,019 - -3.0
426,019 - +0.5
426,037 + -0.8
426,074 - -0.2
426,297 + DVU0375 0.25 -0.4
426,298 - DVU0375 0.25 -0.1
426,365 - DVU0375 0.31 +0.2
426,452 + DVU0375 0.38 -0.8
426,460 - DVU0375 0.39 +0.2
426,490 - DVU0375 0.41 -1.4
426,529 - DVU0375 0.44 -0.5
426,549 + DVU0375 0.46 -0.2
426,552 - DVU0375 0.46 -0.4
426,605 + DVU0375 0.50 -0.4
426,614 + DVU0375 0.51 -0.0
426,622 - DVU0375 0.52 -0.2
426,678 + DVU0375 0.56 -0.1
426,779 - DVU0375 0.64 +0.5
426,782 + DVU0375 0.65 -0.3
426,783 + DVU0375 0.65 -0.0
426,816 - DVU0375 0.67 -0.2

Or see this region's nucleotide sequence