Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0271

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0270 and DVU0271 overlap by 4 nucleotidesDVU0271 and DVU0272 are separated by 296 nucleotidesDVU0272 and DVU0273 are separated by 36 nucleotides DVU0270: DVU0270 - sensory box histidine kinase (TIGR), at 310,963 to 313,233 DVU0270 DVU0271: DVU0271 - response regulator (TIGR), at 313,230 to 314,720 DVU0271 DVU0272: DVU0272 - hypothetical protein (TIGR), at 315,017 to 315,112 DVU0272 DVU0273: DVU0273 - conserved hypothetical protein (TIGR), at 315,149 to 316,666 DVU0273 Position (kb) 313 314 315Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 312.320 kb on + strand, within DVU0270at 312.345 kb on - strand, within DVU0270at 312.357 kb on + strand, within DVU0270at 312.420 kb on + strand, within DVU0270at 312.441 kb on + strand, within DVU0270at 312.505 kb on + strand, within DVU0270at 312.577 kb on - strand, within DVU0270at 312.591 kb on + strand, within DVU0270at 312.599 kb on - strand, within DVU0270at 312.693 kb on + strand, within DVU0270at 312.698 kb on + strand, within DVU0270at 312.698 kb on + strand, within DVU0270at 312.701 kb on - strand, within DVU0270at 312.786 kb on - strand, within DVU0270at 312.849 kb on + strand, within DVU0270at 312.969 kb on + strand, within DVU0270at 312.969 kb on + strand, within DVU0270at 313.038 kb on - strandat 313.057 kb on - strandat 313.108 kb on + strandat 313.108 kb on + strandat 313.108 kb on + strandat 313.108 kb on + strandat 313.109 kb on + strandat 313.116 kb on - strandat 313.116 kb on - strandat 313.116 kb on - strandat 313.137 kb on + strandat 313.237 kb on + strandat 313.245 kb on - strandat 313.345 kb on + strandat 313.345 kb on + strandat 313.417 kb on - strand, within DVU0271at 313.422 kb on - strand, within DVU0271at 313.453 kb on + strand, within DVU0271at 313.461 kb on - strand, within DVU0271at 313.543 kb on - strand, within DVU0271at 313.543 kb on - strand, within DVU0271at 313.582 kb on + strand, within DVU0271at 313.616 kb on + strand, within DVU0271at 313.639 kb on - strand, within DVU0271at 313.671 kb on - strand, within DVU0271at 313.801 kb on + strand, within DVU0271at 313.818 kb on + strand, within DVU0271at 313.833 kb on + strand, within DVU0271at 313.841 kb on - strand, within DVU0271at 313.858 kb on + strand, within DVU0271at 313.876 kb on - strand, within DVU0271at 313.883 kb on + strand, within DVU0271at 313.916 kb on + strand, within DVU0271at 313.982 kb on + strand, within DVU0271at 313.996 kb on + strand, within DVU0271at 313.996 kb on + strand, within DVU0271at 313.996 kb on + strand, within DVU0271at 313.996 kb on + strand, within DVU0271at 314.004 kb on - strand, within DVU0271at 314.061 kb on - strand, within DVU0271at 314.076 kb on + strand, within DVU0271at 314.102 kb on - strand, within DVU0271at 314.173 kb on - strand, within DVU0271at 314.173 kb on - strand, within DVU0271at 314.212 kb on + strand, within DVU0271at 314.304 kb on + strand, within DVU0271at 314.310 kb on - strand, within DVU0271at 314.366 kb on - strand, within DVU0271at 314.452 kb on - strand, within DVU0271at 314.467 kb on + strand, within DVU0271at 314.499 kb on + strand, within DVU0271at 314.562 kb on + strand, within DVU0271at 314.562 kb on + strand, within DVU0271at 314.570 kb on - strand, within DVU0271at 314.572 kb on - strandat 314.640 kb on - strandat 314.680 kb on + strandat 314.714 kb on + strandat 314.714 kb on + strandat 314.714 kb on + strandat 314.714 kb on + strandat 314.714 kb on + strandat 314.714 kb on + strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.732 kb on - strandat 314.952 kb on - strandat 315.003 kb on + strandat 315.027 kb on - strand, within DVU0272at 315.047 kb on + strand, within DVU0272at 315.050 kb on - strand, within DVU0272at 315.050 kb on - strand, within DVU0272at 315.050 kb on - strand, within DVU0272at 315.055 kb on - strand, within DVU0272at 315.057 kb on - strand, within DVU0272at 315.094 kb on + strand, within DVU0272at 315.151 kb on + strandat 315.239 kb on - strandat 315.266 kb on + strandat 315.266 kb on + strandat 315.274 kb on - strandat 315.446 kb on + strand, within DVU0273at 315.543 kb on + strand, within DVU0273at 315.585 kb on + strand, within DVU0273at 315.585 kb on + strand, within DVU0273at 315.593 kb on - strand, within DVU0273at 315.632 kb on + strand, within DVU0273at 315.659 kb on - strand, within DVU0273at 315.691 kb on + strand, within DVU0273at 315.699 kb on - strand, within DVU0273at 315.699 kb on - strand, within DVU0273at 315.699 kb on - strand, within DVU0273at 315.699 kb on - strand, within DVU0273

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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312,320 + DVU0270 0.60 -0.2
312,345 - DVU0270 0.61 -0.3
312,357 + DVU0270 0.61 -3.0
312,420 + DVU0270 0.64 -0.0
312,441 + DVU0270 0.65 -0.7
312,505 + DVU0270 0.68 +0.6
312,577 - DVU0270 0.71 -0.5
312,591 + DVU0270 0.72 +0.4
312,599 - DVU0270 0.72 -0.1
312,693 + DVU0270 0.76 +0.1
312,698 + DVU0270 0.76 -0.8
312,698 + DVU0270 0.76 -0.1
312,701 - DVU0270 0.77 -0.5
312,786 - DVU0270 0.80 -0.2
312,849 + DVU0270 0.83 -0.0
312,969 + DVU0270 0.88 -0.8
312,969 + DVU0270 0.88 -1.8
313,038 - -1.8
313,057 - -0.3
313,108 + -0.8
313,108 + -3.1
313,108 + -0.9
313,108 + -0.5
313,109 + -0.5
313,116 - -0.6
313,116 - -3.0
313,116 - -3.0
313,137 + -2.9
313,237 + -3.5
313,245 - -0.2
313,345 + -4.3
313,345 + -2.4
313,417 - DVU0271 0.13 -3.1
313,422 - DVU0271 0.13 -0.2
313,453 + DVU0271 0.15 +0.1
313,461 - DVU0271 0.15 -2.7
313,543 - DVU0271 0.21 -0.2
313,543 - DVU0271 0.21 -0.5
313,582 + DVU0271 0.24 -0.4
313,616 + DVU0271 0.26 -0.3
313,639 - DVU0271 0.27 -0.6
313,671 - DVU0271 0.30 -0.3
313,801 + DVU0271 0.38 -1.5
313,818 + DVU0271 0.39 -0.5
313,833 + DVU0271 0.40 -1.0
313,841 - DVU0271 0.41 -0.0
313,858 + DVU0271 0.42 -3.7
313,876 - DVU0271 0.43 -3.1
313,883 + DVU0271 0.44 -0.2
313,916 + DVU0271 0.46 -1.1
313,982 + DVU0271 0.50 -0.5
313,996 + DVU0271 0.51 -3.9
313,996 + DVU0271 0.51 -0.1
313,996 + DVU0271 0.51 +1.4
313,996 + DVU0271 0.51 -0.2
314,004 - DVU0271 0.52 +0.1
314,061 - DVU0271 0.56 -3.5
314,076 + DVU0271 0.57 -0.6
314,102 - DVU0271 0.58 -0.2
314,173 - DVU0271 0.63 -1.2
314,173 - DVU0271 0.63 -0.0
314,212 + DVU0271 0.66 +0.1
314,304 + DVU0271 0.72 +0.2
314,310 - DVU0271 0.72 -1.5
314,366 - DVU0271 0.76 -1.5
314,452 - DVU0271 0.82 -0.4
314,467 + DVU0271 0.83 -0.4
314,499 + DVU0271 0.85 +0.7
314,562 + DVU0271 0.89 -1.5
314,562 + DVU0271 0.89 -0.5
314,570 - DVU0271 0.90 -0.0
314,572 - +0.1
314,640 - -0.7
314,680 + -0.5
314,714 + +0.6
314,714 + -0.8
314,714 + -0.7
314,714 + +0.5
314,714 + -0.4
314,714 + +0.1
314,722 - -0.3
314,722 - -0.9
314,722 - +0.8
314,722 - +0.8
314,722 - -0.2
314,722 - -0.7
314,722 - +1.1
314,722 - -0.5
314,722 - -0.0
314,722 - -0.8
314,722 - -2.7
314,732 - -0.7
314,952 - -0.1
315,003 + -0.2
315,027 - DVU0272 0.10 -0.5
315,047 + DVU0272 0.31 +0.7
315,050 - DVU0272 0.34 -0.3
315,050 - DVU0272 0.34 +0.0
315,050 - DVU0272 0.34 +0.1
315,055 - DVU0272 0.40 +0.2
315,057 - DVU0272 0.42 -1.1
315,094 + DVU0272 0.80 -0.9
315,151 + -0.6
315,239 - -0.4
315,266 + +0.1
315,266 + +1.3
315,274 - -0.3
315,446 + DVU0273 0.20 -0.4
315,543 + DVU0273 0.26 -3.2
315,585 + DVU0273 0.29 -0.9
315,585 + DVU0273 0.29 -3.1
315,593 - DVU0273 0.29 +0.5
315,632 + DVU0273 0.32 -2.8
315,659 - DVU0273 0.34 -0.1
315,691 + DVU0273 0.36 +0.9
315,699 - DVU0273 0.36 -1.1
315,699 - DVU0273 0.36 -0.2
315,699 - DVU0273 0.36 +0.7
315,699 - DVU0273 0.36 -0.5

Or see this region's nucleotide sequence