Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0095

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0094 and potD-1 are separated by 140 nucleotidespotD-1 and potC are separated by 1 nucleotidespotC and potB are separated by 2 nucleotides DVU0094: DVU0094 - methyl-accepting chemotaxis protein (TIGR), at 123,374 to 125,536 DVU0094 DVU0095: potD-1 - polyamine ABC transporter, periplasmic polyamine-binding protein (TIGR), at 125,677 to 126,714 potD-1 DVU0096: potC - polyamine ABC transporter, permease protein (TIGR), at 126,716 to 127,489 potC DVU0097: potB - polyamine ABC transporter, permease protein (TIGR), at 127,492 to 128,379 potB Position (kb) 125 126 127Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 124.682 kb on + strand, within DVU0094at 124.690 kb on - strand, within DVU0094at 124.744 kb on - strand, within DVU0094at 124.758 kb on + strand, within DVU0094at 124.935 kb on + strand, within DVU0094at 124.939 kb on - strand, within DVU0094at 124.955 kb on + strand, within DVU0094at 124.963 kb on - strand, within DVU0094at 124.974 kb on - strand, within DVU0094at 125.202 kb on + strand, within DVU0094at 125.202 kb on + strand, within DVU0094at 125.210 kb on - strand, within DVU0094at 125.220 kb on - strand, within DVU0094at 125.227 kb on - strand, within DVU0094at 125.229 kb on + strand, within DVU0094at 125.229 kb on + strand, within DVU0094at 125.271 kb on - strand, within DVU0094at 125.289 kb on + strand, within DVU0094at 125.297 kb on - strand, within DVU0094at 125.297 kb on - strand, within DVU0094at 125.297 kb on - strand, within DVU0094at 125.345 kb on - strandat 125.345 kb on - strandat 125.531 kb on + strandat 125.531 kb on + strandat 125.531 kb on + strandat 125.531 kb on + strandat 125.531 kb on + strandat 125.531 kb on + strandat 125.539 kb on - strandat 125.539 kb on - strandat 125.539 kb on - strandat 125.539 kb on - strandat 125.689 kb on + strandat 125.697 kb on - strandat 125.707 kb on - strandat 125.869 kb on - strand, within potD-1at 125.905 kb on + strand, within potD-1at 126.005 kb on - strand, within potD-1at 126.050 kb on + strand, within potD-1at 126.058 kb on - strand, within potD-1at 126.068 kb on + strand, within potD-1at 126.236 kb on + strand, within potD-1at 126.239 kb on - strand, within potD-1at 126.242 kb on + strand, within potD-1at 126.244 kb on - strand, within potD-1at 126.292 kb on + strand, within potD-1at 126.300 kb on - strand, within potD-1at 126.315 kb on - strand, within potD-1at 126.326 kb on - strand, within potD-1at 126.342 kb on - strand, within potD-1at 126.378 kb on - strand, within potD-1at 126.390 kb on + strand, within potD-1at 126.414 kb on + strand, within potD-1at 126.490 kb on + strand, within potD-1at 126.553 kb on + strand, within potD-1at 126.561 kb on - strand, within potD-1at 126.592 kb on + strand, within potD-1at 126.592 kb on + strand, within potD-1at 126.600 kb on - strand, within potD-1at 126.633 kb on - strandat 126.671 kb on + strandat 126.679 kb on - strandat 126.679 kb on - strandat 126.731 kb on - strandat 126.734 kb on + strandat 126.754 kb on + strandat 126.760 kb on + strandat 126.884 kb on + strand, within potCat 126.889 kb on - strand, within potCat 126.954 kb on - strand, within potCat 126.999 kb on - strand, within potCat 127.008 kb on + strand, within potCat 127.027 kb on - strand, within potCat 127.149 kb on + strand, within potCat 127.171 kb on + strand, within potCat 127.187 kb on - strand, within potCat 127.194 kb on + strand, within potCat 127.199 kb on + strand, within potCat 127.199 kb on + strand, within potCat 127.199 kb on + strand, within potCat 127.207 kb on - strand, within potCat 127.207 kb on - strand, within potCat 127.207 kb on - strand, within potCat 127.207 kb on - strand, within potCat 127.304 kb on + strand, within potCat 127.312 kb on - strand, within potCat 127.387 kb on + strand, within potCat 127.395 kb on - strand, within potCat 127.417 kb on + strandat 127.425 kb on - strandat 127.426 kb on - strandat 127.450 kb on - strandat 127.451 kb on - strandat 127.453 kb on + strandat 127.461 kb on - strandat 127.520 kb on - strandat 127.539 kb on - strandat 127.574 kb on + strandat 127.582 kb on - strand, within potB

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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124,682 + DVU0094 0.60 +0.3
124,690 - DVU0094 0.61 -1.0
124,744 - DVU0094 0.63 -2.1
124,758 + DVU0094 0.64 +0.2
124,935 + DVU0094 0.72 -0.4
124,939 - DVU0094 0.72 +0.8
124,955 + DVU0094 0.73 +0.1
124,963 - DVU0094 0.73 +1.0
124,974 - DVU0094 0.74 +0.6
125,202 + DVU0094 0.85 +0.1
125,202 + DVU0094 0.85 -0.8
125,210 - DVU0094 0.85 -0.2
125,220 - DVU0094 0.85 -2.3
125,227 - DVU0094 0.86 -0.5
125,229 + DVU0094 0.86 +0.1
125,229 + DVU0094 0.86 -4.1
125,271 - DVU0094 0.88 -0.3
125,289 + DVU0094 0.89 -3.8
125,297 - DVU0094 0.89 -1.2
125,297 - DVU0094 0.89 -0.2
125,297 - DVU0094 0.89 +0.6
125,345 - -0.1
125,345 - +0.2
125,531 + -0.0
125,531 + +0.2
125,531 + -1.1
125,531 + -0.0
125,531 + +0.4
125,531 + +0.4
125,539 - +1.1
125,539 - +0.9
125,539 - +0.3
125,539 - -0.5
125,689 + -0.4
125,697 - +0.2
125,707 - +0.2
125,869 - potD-1 DVU0095 0.18 -0.4
125,905 + potD-1 DVU0095 0.22 -0.1
126,005 - potD-1 DVU0095 0.32 -0.1
126,050 + potD-1 DVU0095 0.36 -3.9
126,058 - potD-1 DVU0095 0.37 +1.3
126,068 + potD-1 DVU0095 0.38 -2.8
126,236 + potD-1 DVU0095 0.54 -2.2
126,239 - potD-1 DVU0095 0.54 -2.0
126,242 + potD-1 DVU0095 0.54 -3.2
126,244 - potD-1 DVU0095 0.55 -0.6
126,292 + potD-1 DVU0095 0.59 -0.4
126,300 - potD-1 DVU0095 0.60 -0.7
126,315 - potD-1 DVU0095 0.61 +0.3
126,326 - potD-1 DVU0095 0.63 +0.3
126,342 - potD-1 DVU0095 0.64 -0.5
126,378 - potD-1 DVU0095 0.68 +0.4
126,390 + potD-1 DVU0095 0.69 -0.7
126,414 + potD-1 DVU0095 0.71 -1.5
126,490 + potD-1 DVU0095 0.78 -0.4
126,553 + potD-1 DVU0095 0.84 -0.2
126,561 - potD-1 DVU0095 0.85 +0.0
126,592 + potD-1 DVU0095 0.88 -0.4
126,592 + potD-1 DVU0095 0.88 -0.2
126,600 - potD-1 DVU0095 0.89 -1.0
126,633 - -0.1
126,671 + +0.1
126,679 - -0.2
126,679 - -0.3
126,731 - +0.5
126,734 + -0.2
126,754 + -0.4
126,760 + +0.9
126,884 + potC DVU0096 0.22 +0.3
126,889 - potC DVU0096 0.22 +0.9
126,954 - potC DVU0096 0.31 +0.1
126,999 - potC DVU0096 0.37 -0.2
127,008 + potC DVU0096 0.38 -0.1
127,027 - potC DVU0096 0.40 -0.4
127,149 + potC DVU0096 0.56 -4.2
127,171 + potC DVU0096 0.59 +1.8
127,187 - potC DVU0096 0.61 +0.3
127,194 + potC DVU0096 0.62 -0.4
127,199 + potC DVU0096 0.62 +0.5
127,199 + potC DVU0096 0.62 -5.1
127,199 + potC DVU0096 0.62 +1.0
127,207 - potC DVU0096 0.63 -0.3
127,207 - potC DVU0096 0.63 -0.4
127,207 - potC DVU0096 0.63 -0.2
127,207 - potC DVU0096 0.63 -0.1
127,304 + potC DVU0096 0.76 -3.1
127,312 - potC DVU0096 0.77 -0.3
127,387 + potC DVU0096 0.87 -1.4
127,395 - potC DVU0096 0.88 +0.1
127,417 + +0.2
127,425 - -3.3
127,426 - -3.6
127,450 - -0.3
127,451 - -0.2
127,453 + -3.1
127,461 - -0.1
127,520 - +1.8
127,539 - +1.4
127,574 + -0.6
127,582 - potB DVU0097 0.10 -0.6

Or see this region's nucleotide sequence