Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0038

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0036 and DVU0037 are separated by 181 nucleotidesDVU0037 and DVU0038 are separated by 337 nucleotidesDVU0038 and DVU0039 are separated by 211 nucleotidesDVU0039 and DVU0040 are separated by 179 nucleotides DVU0036: DVU0036 - hypothetical protein (TIGR), at 42,287 to 42,742 DVU0036 DVU0037: DVU0037 - conserved hypothetical protein (TIGR), at 42,924 to 43,340 DVU0037 DVU0038: DVU0038 - acyltransferase domain protein (TIGR), at 43,678 to 45,528 DVU0038 DVU0039: DVU0039 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 45,740 to 46,270 DVU0039 DVU0040: DVU0040 - hypothetical protein (TIGR), at 46,450 to 47,064 DVU0040 Position (kb) 43 44 45 46Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 42.701 kb on + strandat 42.701 kb on + strandat 42.709 kb on - strandat 42.716 kb on + strandat 42.719 kb on - strandat 42.970 kb on + strand, within DVU0037at 43.029 kb on - strand, within DVU0037at 43.106 kb on - strand, within DVU0037at 43.225 kb on + strand, within DVU0037at 43.242 kb on + strand, within DVU0037at 43.246 kb on + strand, within DVU0037at 43.246 kb on + strand, within DVU0037at 43.254 kb on - strand, within DVU0037at 43.316 kb on + strandat 43.345 kb on - strandat 43.400 kb on - strandat 43.404 kb on + strandat 43.406 kb on + strandat 43.409 kb on + strandat 43.457 kb on + strandat 43.457 kb on + strandat 43.457 kb on + strandat 43.465 kb on - strandat 43.517 kb on - strandat 43.559 kb on - strandat 43.570 kb on + strandat 43.612 kb on - strandat 43.675 kb on + strandat 43.746 kb on + strandat 43.748 kb on + strandat 43.756 kb on - strandat 43.776 kb on + strandat 43.776 kb on + strandat 43.776 kb on + strandat 43.784 kb on - strandat 43.786 kb on - strandat 43.848 kb on - strandat 43.859 kb on + strandat 43.860 kb on + strandat 43.860 kb on + strandat 43.868 kb on - strand, within DVU0038at 43.952 kb on + strand, within DVU0038at 43.955 kb on - strand, within DVU0038at 43.960 kb on - strand, within DVU0038at 43.960 kb on - strand, within DVU0038at 43.981 kb on + strand, within DVU0038at 43.987 kb on + strand, within DVU0038at 43.989 kb on - strand, within DVU0038at 44.000 kb on - strand, within DVU0038at 44.035 kb on - strand, within DVU0038at 44.054 kb on - strand, within DVU0038at 44.057 kb on + strand, within DVU0038at 44.072 kb on - strand, within DVU0038at 44.157 kb on - strand, within DVU0038at 44.170 kb on + strand, within DVU0038at 44.221 kb on - strand, within DVU0038at 44.223 kb on + strand, within DVU0038at 44.242 kb on - strand, within DVU0038at 44.242 kb on - strand, within DVU0038at 44.242 kb on - strand, within DVU0038at 44.284 kb on + strand, within DVU0038at 44.284 kb on + strand, within DVU0038at 44.284 kb on + strand, within DVU0038at 44.343 kb on - strand, within DVU0038at 44.376 kb on + strand, within DVU0038at 44.406 kb on + strand, within DVU0038at 44.425 kb on + strand, within DVU0038at 44.433 kb on - strand, within DVU0038at 44.433 kb on - strand, within DVU0038at 44.510 kb on + strand, within DVU0038at 44.518 kb on - strand, within DVU0038at 44.518 kb on - strand, within DVU0038at 44.561 kb on - strand, within DVU0038at 44.565 kb on + strand, within DVU0038at 44.565 kb on + strand, within DVU0038at 44.622 kb on - strand, within DVU0038at 44.645 kb on - strand, within DVU0038at 44.655 kb on - strand, within DVU0038at 44.679 kb on + strand, within DVU0038at 44.715 kb on + strand, within DVU0038at 44.730 kb on + strand, within DVU0038at 44.766 kb on + strand, within DVU0038at 44.768 kb on + strand, within DVU0038at 44.773 kb on + strand, within DVU0038at 44.773 kb on + strand, within DVU0038at 44.807 kb on + strand, within DVU0038at 44.836 kb on + strand, within DVU0038at 44.957 kb on - strand, within DVU0038at 44.980 kb on - strand, within DVU0038at 45.060 kb on - strand, within DVU0038at 45.101 kb on - strand, within DVU0038at 45.101 kb on - strand, within DVU0038at 45.211 kb on - strand, within DVU0038at 45.211 kb on - strand, within DVU0038at 45.211 kb on - strand, within DVU0038at 45.326 kb on - strand, within DVU0038at 45.330 kb on + strand, within DVU0038at 45.358 kb on + strandat 45.369 kb on - strandat 45.385 kb on + strandat 45.393 kb on - strandat 45.405 kb on - strandat 45.427 kb on + strandat 45.427 kb on - strandat 45.444 kb on + strandat 45.452 kb on - strandat 45.605 kb on + strandat 45.605 kb on + strandat 45.672 kb on - strandat 45.680 kb on - strandat 45.687 kb on + strandat 45.733 kb on + strandat 45.750 kb on + strandat 45.753 kb on - strandat 45.850 kb on + strand, within DVU0039at 45.964 kb on - strand, within DVU0039at 45.992 kb on - strand, within DVU0039at 46.060 kb on - strand, within DVU0039at 46.062 kb on + strand, within DVU0039at 46.070 kb on - strand, within DVU0039at 46.070 kb on - strand, within DVU0039at 46.119 kb on + strand, within DVU0039at 46.130 kb on + strand, within DVU0039at 46.138 kb on - strand, within DVU0039at 46.138 kb on - strand, within DVU0039at 46.150 kb on + strand, within DVU0039at 46.165 kb on + strand, within DVU0039at 46.165 kb on + strand, within DVU0039at 46.165 kb on + strand, within DVU0039at 46.173 kb on - strand, within DVU0039at 46.173 kb on - strand, within DVU0039at 46.173 kb on - strand, within DVU0039at 46.173 kb on - strand, within DVU0039at 46.173 kb on - strand, within DVU0039at 46.211 kb on - strand, within DVU0039at 46.252 kb on - strandat 46.264 kb on + strandat 46.267 kb on - strandat 46.272 kb on - strandat 46.361 kb on - strandat 46.411 kb on + strandat 46.478 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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42,701 + +0.1
42,701 + -0.2
42,709 - -0.1
42,716 + -0.6
42,719 - -0.2
42,970 + DVU0037 0.11 -3.0
43,029 - DVU0037 0.25 +0.9
43,106 - DVU0037 0.44 -1.6
43,225 + DVU0037 0.72 -0.7
43,242 + DVU0037 0.76 -0.6
43,246 + DVU0037 0.77 -0.3
43,246 + DVU0037 0.77 +0.2
43,254 - DVU0037 0.79 -0.2
43,316 + -2.7
43,345 - -0.1
43,400 - -0.2
43,404 + -0.3
43,406 + +0.1
43,409 + +0.0
43,457 + -0.0
43,457 + -0.0
43,457 + +0.3
43,465 - -0.2
43,517 - -0.8
43,559 - +1.1
43,570 + +0.8
43,612 - -0.1
43,675 + -0.4
43,746 + +0.5
43,748 + -0.9
43,756 - -4.8
43,776 + +0.7
43,776 + +0.5
43,776 + +0.7
43,784 - -0.1
43,786 - -2.8
43,848 - +0.2
43,859 + -0.1
43,860 + +0.9
43,860 + -0.5
43,868 - DVU0038 0.10 +1.5
43,952 + DVU0038 0.15 +0.0
43,955 - DVU0038 0.15 +0.8
43,960 - DVU0038 0.15 -0.2
43,960 - DVU0038 0.15 -0.8
43,981 + DVU0038 0.16 +0.9
43,987 + DVU0038 0.17 -2.5
43,989 - DVU0038 0.17 -0.3
44,000 - DVU0038 0.17 +0.4
44,035 - DVU0038 0.19 +0.2
44,054 - DVU0038 0.20 +0.1
44,057 + DVU0038 0.20 -0.7
44,072 - DVU0038 0.21 +0.2
44,157 - DVU0038 0.26 -3.2
44,170 + DVU0038 0.27 -3.8
44,221 - DVU0038 0.29 -0.4
44,223 + DVU0038 0.29 +1.2
44,242 - DVU0038 0.30 +0.1
44,242 - DVU0038 0.30 +0.9
44,242 - DVU0038 0.30 -0.5
44,284 + DVU0038 0.33 -0.6
44,284 + DVU0038 0.33 +0.0
44,284 + DVU0038 0.33 -0.1
44,343 - DVU0038 0.36 -0.6
44,376 + DVU0038 0.38 -0.4
44,406 + DVU0038 0.39 +0.2
44,425 + DVU0038 0.40 -0.1
44,433 - DVU0038 0.41 +1.1
44,433 - DVU0038 0.41 -0.6
44,510 + DVU0038 0.45 +0.1
44,518 - DVU0038 0.45 -5.7
44,518 - DVU0038 0.45 +0.4
44,561 - DVU0038 0.48 -0.3
44,565 + DVU0038 0.48 +0.1
44,565 + DVU0038 0.48 +0.6
44,622 - DVU0038 0.51 -0.1
44,645 - DVU0038 0.52 +1.2
44,655 - DVU0038 0.53 +0.3
44,679 + DVU0038 0.54 +0.6
44,715 + DVU0038 0.56 -0.3
44,730 + DVU0038 0.57 +0.7
44,766 + DVU0038 0.59 +0.6
44,768 + DVU0038 0.59 +0.4
44,773 + DVU0038 0.59 +0.5
44,773 + DVU0038 0.59 +0.6
44,807 + DVU0038 0.61 +0.4
44,836 + DVU0038 0.63 -0.5
44,957 - DVU0038 0.69 +0.9
44,980 - DVU0038 0.70 -0.3
45,060 - DVU0038 0.75 +0.1
45,101 - DVU0038 0.77 -3.0
45,101 - DVU0038 0.77 -0.2
45,211 - DVU0038 0.83 -1.6
45,211 - DVU0038 0.83 -0.2
45,211 - DVU0038 0.83 -0.3
45,326 - DVU0038 0.89 +0.6
45,330 + DVU0038 0.89 -0.1
45,358 + +0.1
45,369 - +0.6
45,385 + -3.5
45,393 - -0.1
45,405 - -2.5
45,427 + +0.3
45,427 - +0.2
45,444 + +0.4
45,452 - -0.4
45,605 + -3.2
45,605 + -1.0
45,672 - -3.1
45,680 - -3.4
45,687 + -0.0
45,733 + -0.0
45,750 + -3.4
45,753 - -0.5
45,850 + DVU0039 0.21 -1.7
45,964 - DVU0039 0.42 -0.8
45,992 - DVU0039 0.47 -0.5
46,060 - DVU0039 0.60 -4.1
46,062 + DVU0039 0.61 -0.1
46,070 - DVU0039 0.62 -0.8
46,070 - DVU0039 0.62 +0.8
46,119 + DVU0039 0.71 -0.7
46,130 + DVU0039 0.73 -0.2
46,138 - DVU0039 0.75 -2.2
46,138 - DVU0039 0.75 +0.1
46,150 + DVU0039 0.77 +0.6
46,165 + DVU0039 0.80 -1.0
46,165 + DVU0039 0.80 -0.9
46,165 + DVU0039 0.80 +0.2
46,173 - DVU0039 0.82 -0.6
46,173 - DVU0039 0.82 -0.6
46,173 - DVU0039 0.82 -1.0
46,173 - DVU0039 0.82 +1.0
46,173 - DVU0039 0.82 +0.1
46,211 - DVU0039 0.89 -0.4
46,252 - -0.7
46,264 + +0.0
46,267 - +0.5
46,272 - -0.5
46,361 - +0.2
46,411 + -0.2
46,478 + -0.4

Or see this region's nucleotide sequence