Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3327

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3324 and DVU3325 are separated by 79 nucleotidesDVU3325 and DVU3326 are separated by 255 nucleotidesDVU3326 and DVU3327 are separated by 8 nucleotidesDVU3327 and DVU3329 are separated by 658 nucleotidesDVU3329 and DVU3330 are separated by 44 nucleotides DVU3324: DVU3324 - ABC transporter, ATP-binding protein (TIGR), at 3,501,366 to 3,502,031 DVU3324 DVU3325: DVU3325 - hypothetical protein (TIGR), at 3,502,111 to 3,502,167 DVU3325 DVU3326: DVU3326 - multidrug resistance protein, Smr family (TIGR), at 3,502,423 to 3,502,743 DVU3326 DVU3327: DVU3327 - multidrug resistance protein, Smr family (TIGR), at 3,502,752 to 3,503,135 DVU3327 DVU3329: DVU3329 - hypothetical protein (TIGR), at 3,503,794 to 3,503,919 DVU3329 DVU3330: DVU3330 - hypothetical iron-regulated P-type ATPase (Dmitry Rodionov), at 3,503,964 to 3,504,239 DVU3330 Position (kb) 3502 3503 3504Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3501.852 kb on - strand, within DVU3324at 3501.878 kb on + strand, within DVU3324at 3501.926 kb on + strand, within DVU3324at 3501.931 kb on + strand, within DVU3324at 3501.936 kb on + strand, within DVU3324at 3501.954 kb on + strand, within DVU3324at 3501.962 kb on - strand, within DVU3324at 3501.962 kb on - strand, within DVU3324at 3502.016 kb on + strandat 3502.056 kb on - strandat 3502.114 kb on - strandat 3502.129 kb on + strand, within DVU3325at 3502.137 kb on - strand, within DVU3325at 3502.151 kb on - strand, within DVU3325at 3502.196 kb on + strandat 3502.280 kb on + strandat 3502.313 kb on - strandat 3502.334 kb on - strandat 3502.336 kb on + strandat 3502.424 kb on - strandat 3502.430 kb on + strandat 3502.440 kb on - strandat 3502.484 kb on + strand, within DVU3326at 3502.531 kb on - strand, within DVU3326at 3502.554 kb on + strand, within DVU3326at 3502.579 kb on + strand, within DVU3326at 3502.595 kb on - strand, within DVU3326at 3502.603 kb on + strand, within DVU3326at 3502.604 kb on + strand, within DVU3326at 3502.660 kb on - strand, within DVU3326at 3502.798 kb on + strand, within DVU3327at 3502.821 kb on - strand, within DVU3327at 3502.821 kb on - strand, within DVU3327at 3502.832 kb on + strand, within DVU3327at 3502.917 kb on - strand, within DVU3327at 3502.919 kb on + strand, within DVU3327at 3502.926 kb on + strand, within DVU3327at 3502.934 kb on + strand, within DVU3327at 3502.952 kb on - strand, within DVU3327at 3502.952 kb on - strand, within DVU3327at 3503.071 kb on + strand, within DVU3327at 3503.133 kb on + strandat 3503.133 kb on - strandat 3503.218 kb on + strandat 3503.218 kb on + strandat 3503.296 kb on + strandat 3503.318 kb on + strandat 3503.333 kb on + strandat 3503.346 kb on - strandat 3503.375 kb on - strandat 3503.391 kb on - strandat 3503.391 kb on - strandat 3503.391 kb on - strandat 3503.393 kb on - strandat 3503.393 kb on - strandat 3503.480 kb on - strandat 3503.526 kb on - strandat 3503.587 kb on - strandat 3503.597 kb on + strandat 3503.600 kb on - strandat 3503.661 kb on - strandat 3503.700 kb on + strandat 3503.700 kb on + strandat 3503.700 kb on + strandat 3503.703 kb on - strandat 3503.708 kb on - strandat 3503.708 kb on - strandat 3503.708 kb on - strandat 3503.744 kb on + strandat 3503.744 kb on + strandat 3503.744 kb on + strandat 3503.752 kb on - strandat 3503.752 kb on - strandat 3503.752 kb on - strandat 3503.752 kb on - strandat 3503.752 kb on - strandat 3503.752 kb on - strandat 3503.752 kb on - strandat 3503.762 kb on - strandat 3503.771 kb on + strandat 3503.771 kb on + strandat 3503.779 kb on - strandat 3503.794 kb on + strandat 3503.794 kb on + strandat 3503.794 kb on + strandat 3503.808 kb on + strand, within DVU3329at 3503.830 kb on - strand, within DVU3329at 3503.930 kb on + strandat 3503.951 kb on - strandat 3504.002 kb on - strand, within DVU3330at 3504.044 kb on + strand, within DVU3330at 3504.052 kb on - strand, within DVU3330at 3504.052 kb on - strand, within DVU3330at 3504.056 kb on + strand, within DVU3330at 3504.057 kb on - strand, within DVU3330at 3504.057 kb on - strand, within DVU3330at 3504.064 kb on - strand, within DVU3330at 3504.064 kb on - strand, within DVU3330at 3504.064 kb on - strand, within DVU3330at 3504.111 kb on + strand, within DVU3330at 3504.118 kb on + strand, within DVU3330at 3504.118 kb on - strand, within DVU3330

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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3,501,852 - DVU3324 0.73 -0.5
3,501,878 + DVU3324 0.77 +1.1
3,501,926 + DVU3324 0.84 +0.2
3,501,931 + DVU3324 0.85 -3.2
3,501,936 + DVU3324 0.86 +0.5
3,501,954 + DVU3324 0.88 +0.4
3,501,962 - DVU3324 0.89 -0.2
3,501,962 - DVU3324 0.89 +1.1
3,502,016 + -4.0
3,502,056 - -0.5
3,502,114 - -0.0
3,502,129 + DVU3325 0.32 +0.7
3,502,137 - DVU3325 0.46 -0.2
3,502,151 - DVU3325 0.70 -0.0
3,502,196 + +0.1
3,502,280 + +0.2
3,502,313 - +0.2
3,502,334 - +0.1
3,502,336 + -0.2
3,502,424 - +0.0
3,502,430 + -0.6
3,502,440 - +0.1
3,502,484 + DVU3326 0.19 +0.4
3,502,531 - DVU3326 0.34 +0.2
3,502,554 + DVU3326 0.41 +0.2
3,502,579 + DVU3326 0.49 +0.0
3,502,595 - DVU3326 0.54 +0.6
3,502,603 + DVU3326 0.56 -3.3
3,502,604 + DVU3326 0.56 -0.0
3,502,660 - DVU3326 0.74 -0.3
3,502,798 + DVU3327 0.12 -2.9
3,502,821 - DVU3327 0.18 +0.3
3,502,821 - DVU3327 0.18 -0.1
3,502,832 + DVU3327 0.21 -2.2
3,502,917 - DVU3327 0.43 -1.2
3,502,919 + DVU3327 0.43 -0.0
3,502,926 + DVU3327 0.45 -0.4
3,502,934 + DVU3327 0.47 +0.3
3,502,952 - DVU3327 0.52 -3.9
3,502,952 - DVU3327 0.52 -0.1
3,503,071 + DVU3327 0.83 +0.6
3,503,133 + -3.1
3,503,133 - -0.3
3,503,218 + -3.7
3,503,218 + +0.6
3,503,296 + +1.6
3,503,318 + +0.2
3,503,333 + -0.2
3,503,346 - -0.1
3,503,375 - +0.3
3,503,391 - -0.6
3,503,391 - +0.9
3,503,391 - -0.1
3,503,393 - -0.2
3,503,393 - -3.5
3,503,480 - +0.1
3,503,526 - -4.5
3,503,587 - -0.2
3,503,597 + +0.2
3,503,600 - -0.1
3,503,661 - -0.1
3,503,700 + +0.2
3,503,700 + -0.3
3,503,700 + -0.1
3,503,703 - -0.8
3,503,708 - -2.1
3,503,708 - +0.1
3,503,708 - +1.1
3,503,744 + -4.2
3,503,744 + +0.5
3,503,744 + -3.2
3,503,752 - +0.2
3,503,752 - +0.5
3,503,752 - +0.3
3,503,752 - +0.8
3,503,752 - -0.3
3,503,752 - -0.0
3,503,752 - +1.2
3,503,762 - +0.1
3,503,771 + -0.4
3,503,771 + +0.0
3,503,779 - -0.4
3,503,794 + +0.2
3,503,794 + +0.6
3,503,794 + -3.5
3,503,808 + DVU3329 0.11 -0.5
3,503,830 - DVU3329 0.29 -0.2
3,503,930 + -3.5
3,503,951 - -0.3
3,504,002 - DVU3330 0.14 -0.3
3,504,044 + DVU3330 0.29 +0.2
3,504,052 - DVU3330 0.32 +0.6
3,504,052 - DVU3330 0.32 +0.1
3,504,056 + DVU3330 0.33 -0.5
3,504,057 - DVU3330 0.34 +0.5
3,504,057 - DVU3330 0.34 -3.5
3,504,064 - DVU3330 0.36 -0.2
3,504,064 - DVU3330 0.36 +0.1
3,504,064 - DVU3330 0.36 -0.2
3,504,111 + DVU3330 0.53 +0.1
3,504,118 + DVU3330 0.56 -0.8
3,504,118 - DVU3330 0.56 -0.1

Or see this region's nucleotide sequence