Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3102

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3101 and DVU3102 are separated by 105 nucleotidesDVU3102 and DVU3103 are separated by 76 nucleotides DVU3101: DVU3101 - tonB protein, putative (TIGR), at 3,240,930 to 3,241,955 DVU3101 DVU3102: DVU3102 - hypothetical protein (TIGR), at 3,242,061 to 3,242,648 DVU3102 DVU3103: DVU3103 - tolB protein, putative (TIGR), at 3,242,725 to 3,244,095 DVU3103 Position (kb) 3242 3243Strain fitness (log2 ratio) -3 -2 -1 0 1at 3241.950 kb on + strandat 3241.950 kb on + strandat 3241.950 kb on + strandat 3242.037 kb on + strandat 3242.090 kb on - strandat 3242.131 kb on - strand, within DVU3102at 3242.135 kb on + strand, within DVU3102at 3242.172 kb on + strand, within DVU3102at 3242.172 kb on + strand, within DVU3102at 3242.180 kb on - strand, within DVU3102at 3242.180 kb on - strand, within DVU3102at 3242.180 kb on - strand, within DVU3102at 3242.180 kb on - strand, within DVU3102at 3242.215 kb on - strand, within DVU3102at 3242.223 kb on - strand, within DVU3102at 3242.241 kb on + strand, within DVU3102at 3242.249 kb on - strand, within DVU3102at 3242.271 kb on + strand, within DVU3102at 3242.375 kb on + strand, within DVU3102at 3242.375 kb on + strand, within DVU3102at 3242.387 kb on + strand, within DVU3102at 3242.387 kb on + strand, within DVU3102at 3242.395 kb on - strand, within DVU3102at 3242.410 kb on - strand, within DVU3102at 3242.410 kb on - strand, within DVU3102at 3242.437 kb on + strand, within DVU3102at 3242.439 kb on + strand, within DVU3102at 3242.623 kb on + strandat 3242.623 kb on + strandat 3242.629 kb on - strandat 3242.629 kb on - strandat 3242.640 kb on + strandat 3242.757 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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3,241,950 + +0.3
3,241,950 + +0.6
3,241,950 + -1.1
3,242,037 + +0.0
3,242,090 - +1.7
3,242,131 - DVU3102 0.12 -0.8
3,242,135 + DVU3102 0.13 -0.4
3,242,172 + DVU3102 0.19 -1.5
3,242,172 + DVU3102 0.19 -0.1
3,242,180 - DVU3102 0.20 +0.4
3,242,180 - DVU3102 0.20 -3.2
3,242,180 - DVU3102 0.20 +0.3
3,242,180 - DVU3102 0.20 +0.2
3,242,215 - DVU3102 0.26 +0.1
3,242,223 - DVU3102 0.28 -0.2
3,242,241 + DVU3102 0.31 +0.2
3,242,249 - DVU3102 0.32 -0.2
3,242,271 + DVU3102 0.36 -2.0
3,242,375 + DVU3102 0.53 -3.2
3,242,375 + DVU3102 0.53 -2.9
3,242,387 + DVU3102 0.55 -0.1
3,242,387 + DVU3102 0.55 -0.4
3,242,395 - DVU3102 0.57 -0.8
3,242,410 - DVU3102 0.59 -0.1
3,242,410 - DVU3102 0.59 +0.3
3,242,437 + DVU3102 0.64 -0.1
3,242,439 + DVU3102 0.64 -2.7
3,242,623 + +0.4
3,242,623 + +0.5
3,242,629 - +0.9
3,242,629 - -0.1
3,242,640 + -0.1
3,242,757 + -0.1

Or see this region's nucleotide sequence