Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2837

Experiment: MoLS4 with L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2835 and DVU2836 are separated by 96 nucleotidesDVU2836 and DVU2837 are separated by 112 nucleotidesDVU2837 and DVU2838 are separated by 71 nucleotides DVU2835: DVU2835 - transcriptional regulator, putative (TIGR), at 2,940,240 to 2,940,512 DVU2835 DVU2836: DVU2836 - hypothetical protein (TIGR), at 2,940,609 to 2,941,055 DVU2836 DVU2837: DVU2837 - conserved hypothetical protein (TIGR), at 2,941,168 to 2,942,241 DVU2837 DVU2838: DVU2838 - conserved hypothetical protein (TIGR), at 2,942,313 to 2,943,650 DVU2838 Position (kb) 2941 2942 2943Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2940.168 kb on + strandat 2940.168 kb on + strandat 2940.185 kb on - strandat 2940.190 kb on + strandat 2940.192 kb on - strandat 2940.208 kb on - strandat 2940.288 kb on - strand, within DVU2835at 2940.288 kb on - strand, within DVU2835at 2940.320 kb on + strand, within DVU2835at 2940.338 kb on - strand, within DVU2835at 2940.403 kb on - strand, within DVU2835at 2941.059 kb on - strandat 2941.072 kb on + strandat 2941.090 kb on + strandat 2941.185 kb on + strandat 2941.193 kb on - strandat 2941.194 kb on - strandat 2941.235 kb on - strandat 2941.269 kb on - strandat 2941.303 kb on - strand, within DVU2837at 2941.303 kb on - strand, within DVU2837at 2941.303 kb on - strand, within DVU2837at 2941.357 kb on + strand, within DVU2837at 2941.418 kb on + strand, within DVU2837at 2941.542 kb on + strand, within DVU2837at 2941.550 kb on - strand, within DVU2837at 2941.550 kb on - strand, within DVU2837at 2941.550 kb on - strand, within DVU2837at 2941.615 kb on - strand, within DVU2837at 2941.615 kb on - strand, within DVU2837at 2941.656 kb on + strand, within DVU2837at 2941.704 kb on + strand, within DVU2837at 2941.767 kb on + strand, within DVU2837at 2941.776 kb on + strand, within DVU2837at 2941.776 kb on + strand, within DVU2837at 2941.776 kb on + strand, within DVU2837at 2941.776 kb on + strand, within DVU2837at 2941.784 kb on - strand, within DVU2837at 2941.784 kb on - strand, within DVU2837at 2941.810 kb on - strand, within DVU2837at 2941.820 kb on - strand, within DVU2837at 2941.831 kb on - strand, within DVU2837at 2941.892 kb on - strand, within DVU2837at 2941.892 kb on - strand, within DVU2837at 2941.923 kb on + strand, within DVU2837at 2941.923 kb on + strand, within DVU2837at 2942.084 kb on - strand, within DVU2837at 2942.414 kb on - strandat 2942.929 kb on + strand, within DVU2838at 2943.142 kb on + strand, within DVU2838at 2943.218 kb on + strand, within DVU2838at 2943.218 kb on + strand, within DVU2838at 2943.226 kb on - strand, within DVU2838

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
remove
2,940,168 + +0.1
2,940,168 + -2.9
2,940,185 - -0.0
2,940,190 + -1.9
2,940,192 - +0.5
2,940,208 - -4.2
2,940,288 - DVU2835 0.18 -0.2
2,940,288 - DVU2835 0.18 +0.2
2,940,320 + DVU2835 0.29 +1.1
2,940,338 - DVU2835 0.36 -0.2
2,940,403 - DVU2835 0.60 -4.1
2,941,059 - +0.3
2,941,072 + +0.2
2,941,090 + -0.3
2,941,185 + -0.1
2,941,193 - -0.0
2,941,194 - +0.3
2,941,235 - +0.2
2,941,269 - -0.3
2,941,303 - DVU2837 0.13 -0.3
2,941,303 - DVU2837 0.13 -1.7
2,941,303 - DVU2837 0.13 -3.4
2,941,357 + DVU2837 0.18 +0.2
2,941,418 + DVU2837 0.23 +0.3
2,941,542 + DVU2837 0.35 -0.8
2,941,550 - DVU2837 0.36 -0.4
2,941,550 - DVU2837 0.36 -0.2
2,941,550 - DVU2837 0.36 -2.9
2,941,615 - DVU2837 0.42 -0.5
2,941,615 - DVU2837 0.42 -3.4
2,941,656 + DVU2837 0.45 -0.1
2,941,704 + DVU2837 0.50 +1.2
2,941,767 + DVU2837 0.56 -0.2
2,941,776 + DVU2837 0.57 -0.2
2,941,776 + DVU2837 0.57 -0.1
2,941,776 + DVU2837 0.57 -0.5
2,941,776 + DVU2837 0.57 -0.2
2,941,784 - DVU2837 0.57 -3.5
2,941,784 - DVU2837 0.57 -0.3
2,941,810 - DVU2837 0.60 -3.1
2,941,820 - DVU2837 0.61 +0.1
2,941,831 - DVU2837 0.62 -0.2
2,941,892 - DVU2837 0.67 +0.2
2,941,892 - DVU2837 0.67 +0.3
2,941,923 + DVU2837 0.70 -0.4
2,941,923 + DVU2837 0.70 +0.4
2,942,084 - DVU2837 0.85 -0.3
2,942,414 - -0.1
2,942,929 + DVU2838 0.46 -0.5
2,943,142 + DVU2838 0.62 +0.2
2,943,218 + DVU2838 0.68 -0.6
2,943,218 + DVU2838 0.68 -3.1
2,943,226 - DVU2838 0.68 +1.6

Or see this region's nucleotide sequence