Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2809

Experiment: MoLS4 with L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2807 and DVU2808 overlap by 4 nucleotidesDVU2808 and DVU2809 are separated by 210 nucleotidesDVU2809 and DVU2810 are separated by 14 nucleotides DVU2807: DVU2807 - biopolymer transport protein, ExbD/TolR family (TIGR), at 2,911,246 to 2,911,656 DVU2807 DVU2808: DVU2808 - TonB domain protein (TIGR), at 2,911,653 to 2,912,162 DVU2808 DVU2809: DVU2809 - cytochrome c3 (TIGR), at 2,912,373 to 2,912,807 DVU2809 DVU2810: DVU2810 - formate dehydrogenase formation protein FdhE, putative (TIGR), at 2,912,822 to 2,913,769 DVU2810 Position (kb) 2912 2913Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2911.374 kb on + strand, within DVU2807at 2911.397 kb on - strand, within DVU2807at 2911.474 kb on - strand, within DVU2807at 2911.484 kb on - strand, within DVU2807at 2911.562 kb on - strand, within DVU2807at 2911.578 kb on + strand, within DVU2807at 2911.826 kb on - strand, within DVU2808at 2911.945 kb on + strand, within DVU2808at 2911.970 kb on + strand, within DVU2808at 2912.093 kb on - strand, within DVU2808at 2912.093 kb on - strand, within DVU2808at 2912.183 kb on + strandat 2912.191 kb on - strandat 2912.242 kb on + strandat 2912.245 kb on - strandat 2912.267 kb on + strandat 2912.277 kb on + strandat 2912.298 kb on + strandat 2912.549 kb on + strand, within DVU2809at 2912.587 kb on + strand, within DVU2809at 2912.617 kb on + strand, within DVU2809at 2912.642 kb on - strand, within DVU2809at 2912.655 kb on + strand, within DVU2809at 2912.686 kb on - strand, within DVU2809at 2912.800 kb on - strandat 2912.810 kb on + strandat 2912.813 kb on - strandat 2912.852 kb on - strandat 2912.877 kb on + strandat 2912.902 kb on + strandat 2912.912 kb on + strandat 2912.917 kb on + strand, within DVU2810at 2912.925 kb on - strand, within DVU2810at 2912.944 kb on + strand, within DVU2810at 2912.944 kb on + strand, within DVU2810at 2912.982 kb on - strand, within DVU2810at 2912.982 kb on - strand, within DVU2810at 2913.080 kb on + strand, within DVU2810at 2913.080 kb on + strand, within DVU2810at 2913.102 kb on + strand, within DVU2810at 2913.168 kb on - strand, within DVU2810at 2913.292 kb on + strand, within DVU2810at 2913.350 kb on + strand, within DVU2810at 2913.358 kb on - strand, within DVU2810at 2913.514 kb on - strand, within DVU2810at 2913.530 kb on - strand, within DVU2810at 2913.553 kb on - strand, within DVU2810at 2913.558 kb on + strand, within DVU2810at 2913.611 kb on + strand, within DVU2810at 2913.611 kb on + strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.633 kb on + strand, within DVU2810at 2913.643 kb on + strand, within DVU2810at 2913.659 kb on - strand, within DVU2810at 2913.685 kb on - strandat 2913.799 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
remove
2,911,374 + DVU2807 0.31 -0.7
2,911,397 - DVU2807 0.37 -0.4
2,911,474 - DVU2807 0.55 +1.9
2,911,484 - DVU2807 0.58 -0.3
2,911,562 - DVU2807 0.77 -0.6
2,911,578 + DVU2807 0.81 -0.3
2,911,826 - DVU2808 0.34 -1.1
2,911,945 + DVU2808 0.57 -0.1
2,911,970 + DVU2808 0.62 +1.6
2,912,093 - DVU2808 0.86 -0.6
2,912,093 - DVU2808 0.86 +0.1
2,912,183 + -0.6
2,912,191 - -0.2
2,912,242 + -0.6
2,912,245 - +0.0
2,912,267 + -0.6
2,912,277 + -0.3
2,912,298 + -1.0
2,912,549 + DVU2809 0.40 +0.3
2,912,587 + DVU2809 0.49 -2.6
2,912,617 + DVU2809 0.56 -1.0
2,912,642 - DVU2809 0.62 +1.5
2,912,655 + DVU2809 0.65 -2.9
2,912,686 - DVU2809 0.72 -0.7
2,912,800 - -0.2
2,912,810 + -0.0
2,912,813 - +0.5
2,912,852 - +0.8
2,912,877 + -0.5
2,912,902 + +0.5
2,912,912 + -0.0
2,912,917 + DVU2810 0.10 -0.1
2,912,925 - DVU2810 0.11 -0.8
2,912,944 + DVU2810 0.13 -0.7
2,912,944 + DVU2810 0.13 +0.7
2,912,982 - DVU2810 0.17 -1.6
2,912,982 - DVU2810 0.17 -0.7
2,913,080 + DVU2810 0.27 -0.1
2,913,080 + DVU2810 0.27 -0.2
2,913,102 + DVU2810 0.30 -0.1
2,913,168 - DVU2810 0.36 -0.0
2,913,292 + DVU2810 0.50 +0.1
2,913,350 + DVU2810 0.56 -0.1
2,913,358 - DVU2810 0.57 -1.3
2,913,514 - DVU2810 0.73 -0.6
2,913,530 - DVU2810 0.75 -0.1
2,913,553 - DVU2810 0.77 +0.3
2,913,558 + DVU2810 0.78 -0.5
2,913,611 + DVU2810 0.83 -0.0
2,913,611 + DVU2810 0.83 -0.5
2,913,619 - DVU2810 0.84 -0.1
2,913,619 - DVU2810 0.84 -0.1
2,913,619 - DVU2810 0.84 -3.7
2,913,633 + DVU2810 0.86 -0.0
2,913,643 + DVU2810 0.87 -0.5
2,913,659 - DVU2810 0.88 +0.4
2,913,685 - +0.2
2,913,799 - -0.3

Or see this region's nucleotide sequence