Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2723

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2722 and DVU2723 are separated by 19 nucleotidesDVU2723 and DVU2724 overlap by 4 nucleotidesDVU2724 and DVU2725 overlap by 62 nucleotides DVU2722: DVU2722 - conserved hypothetical protein (TIGR), at 2,826,005 to 2,827,345 DVU2722 DVU2723: DVU2723 - tail protein, putative (TIGR), at 2,827,365 to 2,828,489 DVU2723 DVU2724: DVU2724 - phage baseplate assembly protein V, putative (TIGR), at 2,828,486 to 2,829,112 DVU2724 DVU2725: DVU2725 - membrane protein, putative (TIGR), at 2,829,051 to 2,829,401 DVU2725 Position (kb) 2827 2828 2829Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2826.493 kb on - strand, within DVU2722at 2826.502 kb on + strand, within DVU2722at 2826.570 kb on - strand, within DVU2722at 2826.575 kb on - strand, within DVU2722at 2826.635 kb on - strand, within DVU2722at 2826.649 kb on + strand, within DVU2722at 2826.649 kb on + strand, within DVU2722at 2826.649 kb on + strand, within DVU2722at 2826.657 kb on - strand, within DVU2722at 2826.657 kb on - strand, within DVU2722at 2826.677 kb on + strand, within DVU2722at 2826.677 kb on + strand, within DVU2722at 2826.685 kb on - strand, within DVU2722at 2826.685 kb on - strand, within DVU2722at 2826.685 kb on - strand, within DVU2722at 2826.714 kb on + strand, within DVU2722at 2826.751 kb on + strand, within DVU2722at 2826.756 kb on + strand, within DVU2722at 2826.759 kb on - strand, within DVU2722at 2826.759 kb on - strand, within DVU2722at 2826.803 kb on + strand, within DVU2722at 2826.833 kb on - strand, within DVU2722at 2826.883 kb on + strand, within DVU2722at 2826.900 kb on + strand, within DVU2722at 2826.937 kb on + strand, within DVU2722at 2827.098 kb on + strand, within DVU2722at 2827.118 kb on + strand, within DVU2722at 2827.157 kb on + strand, within DVU2722at 2827.311 kb on + strandat 2827.316 kb on + strandat 2827.316 kb on + strandat 2827.319 kb on - strandat 2827.414 kb on - strandat 2827.443 kb on - strandat 2827.525 kb on + strand, within DVU2723at 2827.529 kb on - strand, within DVU2723at 2827.588 kb on + strand, within DVU2723at 2827.617 kb on - strand, within DVU2723at 2827.669 kb on - strand, within DVU2723at 2827.669 kb on - strand, within DVU2723at 2827.689 kb on + strand, within DVU2723at 2827.707 kb on - strand, within DVU2723at 2827.730 kb on + strand, within DVU2723at 2827.848 kb on - strand, within DVU2723at 2827.924 kb on - strand, within DVU2723at 2827.942 kb on + strand, within DVU2723at 2828.043 kb on + strand, within DVU2723at 2828.077 kb on - strand, within DVU2723at 2828.079 kb on - strand, within DVU2723at 2828.107 kb on - strand, within DVU2723at 2828.130 kb on + strand, within DVU2723at 2828.217 kb on - strand, within DVU2723at 2828.258 kb on + strand, within DVU2723at 2828.310 kb on - strand, within DVU2723at 2828.388 kb on - strandat 2828.392 kb on + strandat 2828.415 kb on - strandat 2828.416 kb on + strandat 2828.628 kb on + strand, within DVU2724at 2828.628 kb on + strand, within DVU2724at 2828.647 kb on + strand, within DVU2724at 2828.658 kb on + strand, within DVU2724at 2828.666 kb on - strand, within DVU2724at 2828.683 kb on + strand, within DVU2724at 2828.691 kb on - strand, within DVU2724at 2828.729 kb on - strand, within DVU2724at 2828.814 kb on + strand, within DVU2724at 2828.920 kb on + strand, within DVU2724at 2829.128 kb on + strand, within DVU2725

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,826,493 - DVU2722 0.36 +1.4
2,826,502 + DVU2722 0.37 +0.6
2,826,570 - DVU2722 0.42 -0.1
2,826,575 - DVU2722 0.43 -0.4
2,826,635 - DVU2722 0.47 -0.0
2,826,649 + DVU2722 0.48 -0.1
2,826,649 + DVU2722 0.48 -3.8
2,826,649 + DVU2722 0.48 +0.6
2,826,657 - DVU2722 0.49 +0.5
2,826,657 - DVU2722 0.49 -1.3
2,826,677 + DVU2722 0.50 +0.7
2,826,677 + DVU2722 0.50 -0.2
2,826,685 - DVU2722 0.51 -2.4
2,826,685 - DVU2722 0.51 -0.4
2,826,685 - DVU2722 0.51 -0.6
2,826,714 + DVU2722 0.53 -1.1
2,826,751 + DVU2722 0.56 -0.3
2,826,756 + DVU2722 0.56 -0.4
2,826,759 - DVU2722 0.56 -0.2
2,826,759 - DVU2722 0.56 +2.9
2,826,803 + DVU2722 0.60 -0.3
2,826,833 - DVU2722 0.62 +0.8
2,826,883 + DVU2722 0.65 -0.3
2,826,900 + DVU2722 0.67 +0.0
2,826,937 + DVU2722 0.70 -0.3
2,827,098 + DVU2722 0.82 -0.4
2,827,118 + DVU2722 0.83 -0.1
2,827,157 + DVU2722 0.86 +0.1
2,827,311 + +0.7
2,827,316 + -0.5
2,827,316 + +0.1
2,827,319 - -2.8
2,827,414 - -0.1
2,827,443 - -0.2
2,827,525 + DVU2723 0.14 -2.8
2,827,529 - DVU2723 0.15 -3.4
2,827,588 + DVU2723 0.20 -1.7
2,827,617 - DVU2723 0.22 +0.3
2,827,669 - DVU2723 0.27 -0.2
2,827,669 - DVU2723 0.27 -0.9
2,827,689 + DVU2723 0.29 -0.9
2,827,707 - DVU2723 0.30 -2.2
2,827,730 + DVU2723 0.32 +0.2
2,827,848 - DVU2723 0.43 -0.2
2,827,924 - DVU2723 0.50 +0.0
2,827,942 + DVU2723 0.51 -2.8
2,828,043 + DVU2723 0.60 +0.3
2,828,077 - DVU2723 0.63 -0.1
2,828,079 - DVU2723 0.63 -0.4
2,828,107 - DVU2723 0.66 +0.3
2,828,130 + DVU2723 0.68 -0.6
2,828,217 - DVU2723 0.76 +0.3
2,828,258 + DVU2723 0.79 -0.5
2,828,310 - DVU2723 0.84 -0.8
2,828,388 - -0.3
2,828,392 + +0.3
2,828,415 - +0.6
2,828,416 + -0.0
2,828,628 + DVU2724 0.23 -3.4
2,828,628 + DVU2724 0.23 +0.1
2,828,647 + DVU2724 0.26 -0.2
2,828,658 + DVU2724 0.27 -3.5
2,828,666 - DVU2724 0.29 +0.8
2,828,683 + DVU2724 0.31 +0.1
2,828,691 - DVU2724 0.33 +0.2
2,828,729 - DVU2724 0.39 +0.4
2,828,814 + DVU2724 0.52 +0.4
2,828,920 + DVU2724 0.69 -0.1
2,829,128 + DVU2725 0.22 -0.8

Or see this region's nucleotide sequence