Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2621

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2620 and DVU2621 are separated by 282 nucleotidesDVU2621 and DVU2622 are separated by 9 nucleotidesDVU2622 and DVU2623 are separated by 297 nucleotidesDVU2623 and DVU2624 are separated by 134 nucleotides DVU2620: DVU2620 - conserved hypothetical protein (TIGR), at 2,740,315 to 2,741,475 DVU2620 DVU2621: DVU2621 - hypothetical protein (TIGR), at 2,741,758 to 2,742,570 DVU2621 DVU2622: DVU2622 - hypothetical protein (TIGR), at 2,742,580 to 2,742,768 DVU2622 DVU2623: DVU2623 - hypothetical protein (TIGR), at 2,743,066 to 2,743,413 DVU2623 DVU2624: DVU2624 - hypothetical protein (TIGR), at 2,743,548 to 2,744,045 DVU2624 Position (kb) 2741 2742 2743Strain fitness (log2 ratio) -3 -2 -1 0 1at 2740.806 kb on - strand, within DVU2620at 2740.827 kb on + strand, within DVU2620at 2740.835 kb on - strand, within DVU2620at 2740.858 kb on - strand, within DVU2620at 2740.858 kb on - strand, within DVU2620at 2740.897 kb on + strand, within DVU2620at 2740.905 kb on - strand, within DVU2620at 2740.970 kb on + strand, within DVU2620at 2741.041 kb on + strand, within DVU2620at 2741.090 kb on + strand, within DVU2620at 2741.143 kb on + strand, within DVU2620at 2741.235 kb on + strand, within DVU2620at 2741.254 kb on - strand, within DVU2620at 2741.315 kb on - strand, within DVU2620at 2741.421 kb on + strandat 2741.469 kb on + strandat 2741.477 kb on - strandat 2741.584 kb on + strandat 2741.592 kb on + strandat 2741.739 kb on - strandat 2741.810 kb on + strandat 2741.810 kb on + strandat 2741.810 kb on + strandat 2741.829 kb on - strandat 2741.926 kb on + strand, within DVU2621at 2742.016 kb on + strand, within DVU2621at 2742.024 kb on - strand, within DVU2621at 2742.073 kb on - strand, within DVU2621at 2742.203 kb on - strand, within DVU2621at 2742.348 kb on - strand, within DVU2621at 2742.375 kb on - strand, within DVU2621at 2742.397 kb on + strand, within DVU2621at 2742.452 kb on - strand, within DVU2621at 2742.454 kb on + strand, within DVU2621at 2742.464 kb on + strand, within DVU2621at 2742.467 kb on - strand, within DVU2621at 2742.467 kb on - strand, within DVU2621at 2742.477 kb on - strand, within DVU2621at 2742.508 kb on + strandat 2742.594 kb on + strandat 2742.775 kb on + strandat 2742.778 kb on - strandat 2742.778 kb on - strandat 2742.782 kb on + strandat 2742.782 kb on + strandat 2742.783 kb on - strandat 2742.790 kb on - strandat 2742.846 kb on - strandat 2742.855 kb on + strandat 2742.896 kb on + strandat 2742.904 kb on - strandat 2742.968 kb on - strandat 2742.987 kb on + strandat 2742.987 kb on + strandat 2743.023 kb on - strandat 2743.067 kb on + strandat 2743.075 kb on - strandat 2743.103 kb on + strand, within DVU2623at 2743.103 kb on + strand, within DVU2623at 2743.105 kb on + strand, within DVU2623at 2743.113 kb on - strand, within DVU2623at 2743.117 kb on + strand, within DVU2623at 2743.139 kb on + strand, within DVU2623at 2743.200 kb on - strand, within DVU2623at 2743.301 kb on - strand, within DVU2623at 2743.303 kb on - strand, within DVU2623at 2743.329 kb on + strand, within DVU2623at 2743.336 kb on + strand, within DVU2623at 2743.372 kb on - strand, within DVU2623at 2743.373 kb on + strand, within DVU2623at 2743.391 kb on - strandat 2743.430 kb on + strandat 2743.543 kb on + strandat 2743.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,740,806 - DVU2620 0.42 -1.0
2,740,827 + DVU2620 0.44 +0.3
2,740,835 - DVU2620 0.45 +0.0
2,740,858 - DVU2620 0.47 -0.6
2,740,858 - DVU2620 0.47 +0.4
2,740,897 + DVU2620 0.50 -0.5
2,740,905 - DVU2620 0.51 +0.2
2,740,970 + DVU2620 0.56 -1.1
2,741,041 + DVU2620 0.63 -0.2
2,741,090 + DVU2620 0.67 -0.4
2,741,143 + DVU2620 0.71 +0.2
2,741,235 + DVU2620 0.79 -0.5
2,741,254 - DVU2620 0.81 -0.1
2,741,315 - DVU2620 0.86 -0.0
2,741,421 + -2.6
2,741,469 + +0.3
2,741,477 - -0.7
2,741,584 + +1.3
2,741,592 + -1.5
2,741,739 - -0.1
2,741,810 + -0.2
2,741,810 + -0.1
2,741,810 + +0.0
2,741,829 - -0.5
2,741,926 + DVU2621 0.21 +0.3
2,742,016 + DVU2621 0.32 -0.7
2,742,024 - DVU2621 0.33 -0.2
2,742,073 - DVU2621 0.39 -0.3
2,742,203 - DVU2621 0.55 +0.1
2,742,348 - DVU2621 0.73 -3.6
2,742,375 - DVU2621 0.76 -0.3
2,742,397 + DVU2621 0.79 -0.0
2,742,452 - DVU2621 0.85 -0.3
2,742,454 + DVU2621 0.86 -3.2
2,742,464 + DVU2621 0.87 -1.0
2,742,467 - DVU2621 0.87 -3.5
2,742,467 - DVU2621 0.87 +0.4
2,742,477 - DVU2621 0.88 +0.1
2,742,508 + -0.8
2,742,594 + -2.7
2,742,775 + -3.2
2,742,778 - +0.5
2,742,778 - -0.3
2,742,782 + -0.2
2,742,782 + -0.3
2,742,783 - +0.4
2,742,790 - +0.1
2,742,846 - -2.8
2,742,855 + -0.4
2,742,896 + +0.2
2,742,904 - +0.3
2,742,968 - -0.2
2,742,987 + -0.5
2,742,987 + +0.0
2,743,023 - +0.3
2,743,067 + +0.9
2,743,075 - -0.5
2,743,103 + DVU2623 0.11 -0.6
2,743,103 + DVU2623 0.11 +0.6
2,743,105 + DVU2623 0.11 -0.1
2,743,113 - DVU2623 0.14 +0.4
2,743,117 + DVU2623 0.15 -3.7
2,743,139 + DVU2623 0.21 +0.2
2,743,200 - DVU2623 0.39 +0.4
2,743,301 - DVU2623 0.68 -0.3
2,743,303 - DVU2623 0.68 +0.1
2,743,329 + DVU2623 0.76 +0.3
2,743,336 + DVU2623 0.78 +0.4
2,743,372 - DVU2623 0.88 -3.3
2,743,373 + DVU2623 0.88 -2.9
2,743,391 - -0.3
2,743,430 + -0.5
2,743,543 + -0.3
2,743,551 - -0.6

Or see this region's nucleotide sequence