Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2218

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2217 and DVU2218 are separated by 71 nucleotidesDVU2218 and DVU2220 are separated by 374 nucleotidesDVU2220 and DVU2221 are separated by 45 nucleotidesDVU2221 and ssb are separated by 4 nucleotides DVU2217: DVU2217 - acetyltransferase, GNAT family (TIGR), at 2,312,523 to 2,313,029 DVU2217 DVU2218: DVU2218 - GTP-binding protein, putative (TIGR), at 2,313,101 to 2,314,147 DVU2218 DVU2220: DVU2220 - conserved hypothetical protein (TIGR), at 2,314,522 to 2,314,791 DVU2220 DVU2221: DVU2221 - hypothetical protein (TIGR), at 2,314,837 to 2,314,977 DVU2221 DVU2222: ssb - single-strand binding protein (TIGR), at 2,314,982 to 2,315,512 ssb Position (kb) 2313 2314 2315Strain fitness (log2 ratio) -3 -2 -1 0 1at 2312.125 kb on + strandat 2312.312 kb on - strandat 2312.528 kb on - strandat 2312.754 kb on - strand, within DVU2217at 2312.764 kb on - strand, within DVU2217at 2312.791 kb on + strand, within DVU2217at 2312.794 kb on - strand, within DVU2217at 2312.794 kb on - strand, within DVU2217at 2312.806 kb on - strand, within DVU2217at 2312.814 kb on - strand, within DVU2217at 2312.906 kb on - strand, within DVU2217at 2312.921 kb on - strand, within DVU2217at 2313.197 kb on - strandat 2313.264 kb on + strand, within DVU2218at 2313.282 kb on - strand, within DVU2218at 2313.330 kb on + strand, within DVU2218at 2313.427 kb on - strand, within DVU2218at 2313.536 kb on - strand, within DVU2218at 2313.600 kb on + strand, within DVU2218at 2313.650 kb on + strand, within DVU2218at 2313.650 kb on + strand, within DVU2218at 2313.650 kb on + strand, within DVU2218at 2313.658 kb on - strand, within DVU2218at 2313.728 kb on - strand, within DVU2218at 2313.742 kb on + strand, within DVU2218at 2313.765 kb on - strand, within DVU2218at 2313.794 kb on - strand, within DVU2218at 2313.844 kb on + strand, within DVU2218at 2313.879 kb on - strand, within DVU2218at 2313.899 kb on + strand, within DVU2218at 2314.016 kb on - strand, within DVU2218at 2314.059 kb on + strandat 2314.159 kb on - strandat 2314.207 kb on + strandat 2314.334 kb on + strandat 2314.342 kb on - strandat 2314.451 kb on - strandat 2314.650 kb on - strand, within DVU2220at 2314.906 kb on - strand, within DVU2221at 2314.980 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,312,125 + +0.0
2,312,312 - -0.4
2,312,528 - -0.6
2,312,754 - DVU2217 0.46 -2.9
2,312,764 - DVU2217 0.48 +1.0
2,312,791 + DVU2217 0.53 +0.5
2,312,794 - DVU2217 0.53 -0.4
2,312,794 - DVU2217 0.53 +0.0
2,312,806 - DVU2217 0.56 -0.5
2,312,814 - DVU2217 0.57 -0.3
2,312,906 - DVU2217 0.76 +0.0
2,312,921 - DVU2217 0.79 +0.0
2,313,197 - -0.1
2,313,264 + DVU2218 0.16 -1.0
2,313,282 - DVU2218 0.17 -0.2
2,313,330 + DVU2218 0.22 -0.2
2,313,427 - DVU2218 0.31 -2.5
2,313,536 - DVU2218 0.42 +0.4
2,313,600 + DVU2218 0.48 -0.4
2,313,650 + DVU2218 0.52 -0.3
2,313,650 + DVU2218 0.52 -3.2
2,313,650 + DVU2218 0.52 -0.6
2,313,658 - DVU2218 0.53 -0.6
2,313,728 - DVU2218 0.60 +0.3
2,313,742 + DVU2218 0.61 -0.1
2,313,765 - DVU2218 0.63 +0.0
2,313,794 - DVU2218 0.66 -0.6
2,313,844 + DVU2218 0.71 -3.5
2,313,879 - DVU2218 0.74 -3.5
2,313,899 + DVU2218 0.76 -0.0
2,314,016 - DVU2218 0.87 +0.9
2,314,059 + -0.3
2,314,159 - -1.0
2,314,207 + -0.1
2,314,334 + -3.0
2,314,342 - +0.2
2,314,451 - -2.6
2,314,650 - DVU2220 0.47 -3.5
2,314,906 - DVU2221 0.49 +0.1
2,314,980 + -3.3

Or see this region's nucleotide sequence