Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2180

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2178 and DVU2179 overlap by 4 nucleotidesDVU2179 and DVU2180 are separated by 155 nucleotidesDVU2180 and DVU2181 are separated by 90 nucleotides DVU2178: DVU2178 - ISDvu2, transposase OrfB (TIGR), at 2,277,993 to 2,278,835 DVU2178 DVU2179: DVU2179 - ISDvu2, transposase OrfA (TIGR), at 2,278,832 to 2,279,230 DVU2179 DVU2180: DVU2180 - hypothetical protein (TIGR), at 2,279,386 to 2,279,526 DVU2180 DVU2181: DVU2181 - antirepressor, putative (TIGR), at 2,279,617 to 2,280,495 DVU2181 Position (kb) 2279 2280Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2279.353 kb on - strandat 2279.475 kb on - strand, within DVU2180at 2279.490 kb on + strand, within DVU2180at 2279.568 kb on + strandat 2279.758 kb on + strand, within DVU2181at 2279.796 kb on - strand, within DVU2181at 2279.826 kb on - strand, within DVU2181at 2279.836 kb on + strand, within DVU2181at 2279.862 kb on + strand, within DVU2181at 2279.862 kb on + strand, within DVU2181at 2279.870 kb on - strand, within DVU2181at 2279.870 kb on - strand, within DVU2181at 2279.870 kb on - strand, within DVU2181at 2279.870 kb on - strand, within DVU2181at 2279.870 kb on - strand, within DVU2181at 2279.920 kb on + strand, within DVU2181at 2279.933 kb on + strand, within DVU2181at 2279.940 kb on - strand, within DVU2181at 2280.001 kb on + strand, within DVU2181at 2280.001 kb on + strand, within DVU2181at 2280.057 kb on - strand, within DVU2181at 2280.116 kb on - strand, within DVU2181at 2280.127 kb on + strand, within DVU2181at 2280.195 kb on - strand, within DVU2181at 2280.337 kb on - strand, within DVU2181at 2280.342 kb on - strand, within DVU2181at 2280.352 kb on + strand, within DVU2181at 2280.400 kb on - strand, within DVU2181

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,279,353 - -0.5
2,279,475 - DVU2180 0.63 -0.5
2,279,490 + DVU2180 0.74 -4.1
2,279,568 + -0.2
2,279,758 + DVU2181 0.16 +0.6
2,279,796 - DVU2181 0.20 -1.2
2,279,826 - DVU2181 0.24 +0.1
2,279,836 + DVU2181 0.25 -0.4
2,279,862 + DVU2181 0.28 -0.7
2,279,862 + DVU2181 0.28 -0.5
2,279,870 - DVU2181 0.29 -0.8
2,279,870 - DVU2181 0.29 -0.4
2,279,870 - DVU2181 0.29 -0.8
2,279,870 - DVU2181 0.29 -0.1
2,279,870 - DVU2181 0.29 -0.4
2,279,920 + DVU2181 0.34 -2.7
2,279,933 + DVU2181 0.36 -4.3
2,279,940 - DVU2181 0.37 -0.3
2,280,001 + DVU2181 0.44 -0.1
2,280,001 + DVU2181 0.44 -0.4
2,280,057 - DVU2181 0.50 +0.2
2,280,116 - DVU2181 0.57 +0.5
2,280,127 + DVU2181 0.58 -3.1
2,280,195 - DVU2181 0.66 -3.4
2,280,337 - DVU2181 0.82 -0.5
2,280,342 - DVU2181 0.82 +0.1
2,280,352 + DVU2181 0.84 -4.1
2,280,400 - DVU2181 0.89 -0.2

Or see this region's nucleotide sequence