Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2068

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2067 and DVU2068 overlap by 1 nucleotidesDVU2068 and DORF15383 are separated by 53 nucleotidesDORF15383 and dprA are separated by 19 nucleotides DVU2067: DVU2067 - GGDEF domain protein (TIGR), at 2,147,609 to 2,148,730 DVU2067 DVU2068: DVU2068 - HD domain protein (TIGR), at 2,148,730 to 2,149,572 DVU2068 DORF15383: DORF15383 - SEED: FIG00602628: hypothetical protein, at 2,149,626 to 2,149,958 DORF15383 DVU2069: dprA - DNA processing protein DprA, putative (TIGR), at 2,149,978 to 2,151,969 dprA Position (kb) 2148 2149 2150Strain fitness (log2 ratio) -3 -2 -1 0 1at 2148.012 kb on - strand, within DVU2067at 2148.125 kb on - strand, within DVU2067at 2148.125 kb on - strand, within DVU2067at 2148.125 kb on - strand, within DVU2067at 2148.198 kb on - strand, within DVU2067at 2148.198 kb on - strand, within DVU2067at 2148.221 kb on + strand, within DVU2067at 2148.603 kb on - strand, within DVU2067at 2148.706 kb on - strandat 2148.708 kb on + strandat 2148.778 kb on + strandat 2148.819 kb on + strand, within DVU2068at 2148.999 kb on - strand, within DVU2068at 2149.010 kb on - strand, within DVU2068at 2149.021 kb on - strand, within DVU2068at 2149.048 kb on + strand, within DVU2068at 2149.056 kb on - strand, within DVU2068at 2149.075 kb on - strand, within DVU2068at 2149.148 kb on - strand, within DVU2068at 2149.251 kb on + strand, within DVU2068at 2149.275 kb on - strand, within DVU2068at 2149.333 kb on - strand, within DVU2068at 2149.378 kb on - strand, within DVU2068at 2149.413 kb on - strand, within DVU2068at 2149.419 kb on + strand, within DVU2068at 2149.511 kb on + strandat 2149.594 kb on - strandat 2149.603 kb on + strandat 2149.697 kb on + strand, within DORF15383at 2149.697 kb on + strand, within DORF15383at 2149.705 kb on - strand, within DORF15383at 2149.705 kb on - strand, within DORF15383at 2149.705 kb on - strand, within DORF15383at 2149.843 kb on + strand, within DORF15383at 2149.867 kb on - strand, within DORF15383at 2149.896 kb on - strand, within DORF15383at 2149.901 kb on + strand, within DORF15383at 2149.906 kb on - strand, within DORF15383at 2149.911 kb on + strand, within DORF15383at 2149.919 kb on - strand, within DORF15383at 2149.986 kb on - strandat 2150.018 kb on + strandat 2150.149 kb on + strandat 2150.213 kb on + strand, within dprAat 2150.265 kb on + strand, within dprAat 2150.412 kb on - strand, within dprAat 2150.412 kb on - strand, within dprAat 2150.414 kb on + strand, within dprAat 2150.416 kb on + strand, within dprAat 2150.440 kb on + strand, within dprAat 2150.475 kb on + strand, within dprAat 2150.539 kb on + strand, within dprA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,148,012 - DVU2067 0.36 +0.4
2,148,125 - DVU2067 0.46 +1.1
2,148,125 - DVU2067 0.46 +0.3
2,148,125 - DVU2067 0.46 +0.2
2,148,198 - DVU2067 0.52 -1.4
2,148,198 - DVU2067 0.52 -1.3
2,148,221 + DVU2067 0.55 -0.4
2,148,603 - DVU2067 0.89 -0.7
2,148,706 - -0.6
2,148,708 + -2.2
2,148,778 + -2.9
2,148,819 + DVU2068 0.11 -2.6
2,148,999 - DVU2068 0.32 -3.2
2,149,010 - DVU2068 0.33 +0.8
2,149,021 - DVU2068 0.35 -0.2
2,149,048 + DVU2068 0.38 -0.4
2,149,056 - DVU2068 0.39 +0.8
2,149,075 - DVU2068 0.41 -3.2
2,149,148 - DVU2068 0.50 +0.4
2,149,251 + DVU2068 0.62 +0.7
2,149,275 - DVU2068 0.65 +0.1
2,149,333 - DVU2068 0.72 -3.4
2,149,378 - DVU2068 0.77 -0.3
2,149,413 - DVU2068 0.81 +0.2
2,149,419 + DVU2068 0.82 -3.1
2,149,511 + -0.0
2,149,594 - -3.2
2,149,603 + -0.3
2,149,697 + DORF15383 0.21 -2.8
2,149,697 + DORF15383 0.21 +0.3
2,149,705 - DORF15383 0.24 +0.1
2,149,705 - DORF15383 0.24 +0.3
2,149,705 - DORF15383 0.24 -0.6
2,149,843 + DORF15383 0.65 +0.2
2,149,867 - DORF15383 0.72 +0.1
2,149,896 - DORF15383 0.81 -0.1
2,149,901 + DORF15383 0.83 -0.3
2,149,906 - DORF15383 0.84 -0.2
2,149,911 + DORF15383 0.86 +0.2
2,149,919 - DORF15383 0.88 -2.5
2,149,986 - +0.2
2,150,018 + -3.2
2,150,149 + -0.2
2,150,213 + dprA DVU2069 0.12 -0.2
2,150,265 + dprA DVU2069 0.14 -0.8
2,150,412 - dprA DVU2069 0.22 -0.3
2,150,412 - dprA DVU2069 0.22 +0.7
2,150,414 + dprA DVU2069 0.22 -0.7
2,150,416 + dprA DVU2069 0.22 -2.8
2,150,440 + dprA DVU2069 0.23 -0.3
2,150,475 + dprA DVU2069 0.25 -0.0
2,150,539 + dprA DVU2069 0.28 -0.2

Or see this region's nucleotide sequence