Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1902

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1901 and DVU1902 are separated by 148 nucleotidesDVU1902 and mfd are separated by 58 nucleotides DVU1901: DVU1901 - peptidyl-prolyl cis-trans isomerase domain protein (TIGR), at 1,975,298 to 1,976,233 DVU1901 DVU1902: DVU1902 - conserved hypothetical protein (TIGR), at 1,976,382 to 1,977,320 DVU1902 DVU1903: mfd - transcription-repair coupling factor (TIGR), at 1,977,379 to 1,980,861 mfd Position (kb) 1976 1977 1978Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1976.289 kb on + strandat 1976.461 kb on - strandat 1976.461 kb on - strandat 1976.510 kb on + strand, within DVU1902at 1976.559 kb on + strand, within DVU1902at 1976.559 kb on - strand, within DVU1902at 1976.586 kb on + strand, within DVU1902at 1976.606 kb on + strand, within DVU1902at 1976.868 kb on + strand, within DVU1902at 1976.902 kb on - strand, within DVU1902at 1976.912 kb on - strand, within DVU1902at 1976.930 kb on + strand, within DVU1902at 1976.982 kb on - strand, within DVU1902at 1977.128 kb on - strand, within DVU1902at 1977.138 kb on - strand, within DVU1902at 1977.141 kb on + strand, within DVU1902at 1977.269 kb on - strandat 1977.269 kb on - strandat 1977.270 kb on - strandat 1977.326 kb on - strandat 1977.418 kb on - strandat 1977.449 kb on - strandat 1977.559 kb on + strandat 1977.604 kb on - strandat 1977.604 kb on - strandat 1977.604 kb on - strandat 1977.621 kb on - strandat 1977.726 kb on + strandat 1977.729 kb on - strand, within mfdat 1977.766 kb on - strand, within mfdat 1977.863 kb on + strand, within mfdat 1977.863 kb on + strand, within mfdat 1978.005 kb on + strand, within mfdat 1978.023 kb on - strand, within mfdat 1978.148 kb on + strand, within mfdat 1978.208 kb on + strand, within mfdat 1978.280 kb on - strand, within mfdat 1978.302 kb on + strand, within mfdat 1978.315 kb on - strand, within mfdat 1978.315 kb on - strand, within mfdat 1978.315 kb on - strand, within mfd

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,976,289 + -1.6
1,976,461 - +0.3
1,976,461 - -0.6
1,976,510 + DVU1902 0.14 +1.4
1,976,559 + DVU1902 0.19 -2.7
1,976,559 - DVU1902 0.19 -3.2
1,976,586 + DVU1902 0.22 -0.2
1,976,606 + DVU1902 0.24 -0.1
1,976,868 + DVU1902 0.52 +0.1
1,976,902 - DVU1902 0.55 -0.1
1,976,912 - DVU1902 0.56 -0.3
1,976,930 + DVU1902 0.58 +0.5
1,976,982 - DVU1902 0.64 -2.8
1,977,128 - DVU1902 0.79 +0.1
1,977,138 - DVU1902 0.81 -0.2
1,977,141 + DVU1902 0.81 -0.2
1,977,269 - -0.4
1,977,269 - +0.6
1,977,270 - -0.2
1,977,326 - +1.0
1,977,418 - -0.6
1,977,449 - +0.2
1,977,559 + -0.3
1,977,604 - -0.0
1,977,604 - -0.7
1,977,604 - -3.3
1,977,621 - +0.6
1,977,726 + -0.4
1,977,729 - mfd DVU1903 0.10 +0.9
1,977,766 - mfd DVU1903 0.11 +0.1
1,977,863 + mfd DVU1903 0.14 -0.4
1,977,863 + mfd DVU1903 0.14 -1.9
1,978,005 + mfd DVU1903 0.18 -0.1
1,978,023 - mfd DVU1903 0.18 -0.2
1,978,148 + mfd DVU1903 0.22 -3.9
1,978,208 + mfd DVU1903 0.24 -0.7
1,978,280 - mfd DVU1903 0.26 -1.3
1,978,302 + mfd DVU1903 0.27 -0.5
1,978,315 - mfd DVU1903 0.27 -3.0
1,978,315 - mfd DVU1903 0.27 +0.3
1,978,315 - mfd DVU1903 0.27 -0.0

Or see this region's nucleotide sequence