Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1898

Experiment: MoLS4 with L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglyS and glyQ are separated by 17 nucleotidesglyQ and DVU1899 are separated by 49 nucleotidesDVU1899 and DVU1900 are separated by 2 nucleotides DVU1897: glyS - glycyl-tRNA synthetase, beta subunit (TIGR), at 1,970,475 to 1,972,565 glyS DVU1898: glyQ - glycyl-tRNA synthetase, alpha subunit (TIGR), at 1,972,583 to 1,973,452 glyQ DVU1899: DVU1899 - DNA repair protein RecO, putative (TIGR), at 1,973,502 to 1,974,257 DVU1899 DVU1900: DVU1900 - conserved hypothetical protein (TIGR), at 1,974,260 to 1,975,201 DVU1900 Position (kb) 1972 1973 1974Strain fitness (log2 ratio) -3 -2 -1 0 1at 1973.462 kb on - strandat 1973.508 kb on - strandat 1973.555 kb on - strandat 1973.555 kb on - strandat 1973.610 kb on - strand, within DVU1899at 1973.617 kb on - strand, within DVU1899at 1973.637 kb on - strand, within DVU1899at 1973.653 kb on + strand, within DVU1899at 1973.687 kb on + strand, within DVU1899at 1973.749 kb on + strand, within DVU1899at 1973.798 kb on + strand, within DVU1899at 1973.855 kb on - strand, within DVU1899at 1973.908 kb on - strand, within DVU1899at 1973.912 kb on + strand, within DVU1899at 1973.954 kb on - strand, within DVU1899at 1974.035 kb on - strand, within DVU1899at 1974.049 kb on + strand, within DVU1899at 1974.115 kb on - strand, within DVU1899at 1974.218 kb on + strandat 1974.416 kb on - strand, within DVU1900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
remove
1,973,462 - -0.0
1,973,508 - -0.7
1,973,555 - -0.2
1,973,555 - -3.7
1,973,610 - DVU1899 0.14 -2.7
1,973,617 - DVU1899 0.15 -0.6
1,973,637 - DVU1899 0.18 -0.9
1,973,653 + DVU1899 0.20 -0.1
1,973,687 + DVU1899 0.24 -0.4
1,973,749 + DVU1899 0.33 -0.0
1,973,798 + DVU1899 0.39 -0.4
1,973,855 - DVU1899 0.47 -0.7
1,973,908 - DVU1899 0.54 -3.1
1,973,912 + DVU1899 0.54 -0.0
1,973,954 - DVU1899 0.60 -3.4
1,974,035 - DVU1899 0.71 -1.4
1,974,049 + DVU1899 0.72 -2.4
1,974,115 - DVU1899 0.81 -0.6
1,974,218 + -0.4
1,974,416 - DVU1900 0.17 -0.1

Or see this region's nucleotide sequence