Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1880

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1879 and DVU1880 are separated by 394 nucleotidesDVU1880 and phoH are separated by 161 nucleotides DVU1879: DVU1879 - glycosyl transferase, group 1 family protein (TIGR), at 1,947,269 to 1,948,369 DVU1879 DVU1880: DVU1880 - hypothetical protein (TIGR), at 1,948,764 to 1,949,405 DVU1880 DVU1881: phoH - phoH family protein (TIGR), at 1,949,567 to 1,950,583 phoH Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -3 -2 -1 0 1at 1948.498 kb on + strandat 1948.506 kb on + strandat 1948.529 kb on - strandat 1948.537 kb on + strandat 1948.708 kb on - strandat 1948.743 kb on - strandat 1948.762 kb on + strandat 1948.762 kb on + strandat 1948.769 kb on - strandat 1948.955 kb on - strand, within DVU1880at 1949.135 kb on + strand, within DVU1880at 1949.178 kb on - strand, within DVU1880at 1949.215 kb on + strand, within DVU1880at 1949.228 kb on - strand, within DVU1880at 1949.250 kb on - strand, within DVU1880at 1949.262 kb on - strand, within DVU1880at 1949.344 kb on - strandat 1949.385 kb on + strandat 1949.441 kb on - strandat 1949.540 kb on + strandat 1949.635 kb on - strandat 1949.662 kb on - strandat 1949.791 kb on + strand, within phoHat 1949.791 kb on + strand, within phoHat 1949.791 kb on + strand, within phoHat 1949.791 kb on + strand, within phoHat 1949.799 kb on - strand, within phoHat 1949.799 kb on - strand, within phoHat 1949.822 kb on + strand, within phoHat 1949.825 kb on - strand, within phoHat 1949.833 kb on + strand, within phoHat 1950.036 kb on + strand, within phoHat 1950.054 kb on - strand, within phoHat 1950.074 kb on + strand, within phoHat 1950.150 kb on - strand, within phoHat 1950.176 kb on - strand, within phoHat 1950.227 kb on - strand, within phoHat 1950.271 kb on + strand, within phoHat 1950.299 kb on + strand, within phoHat 1950.322 kb on + strand, within phoH

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,948,498 + +0.1
1,948,506 + -0.8
1,948,529 - +0.5
1,948,537 + +0.5
1,948,708 - -0.5
1,948,743 - +0.9
1,948,762 + -1.1
1,948,762 + -0.7
1,948,769 - +0.5
1,948,955 - DVU1880 0.30 -0.2
1,949,135 + DVU1880 0.58 -0.2
1,949,178 - DVU1880 0.64 +0.0
1,949,215 + DVU1880 0.70 -0.1
1,949,228 - DVU1880 0.72 -0.1
1,949,250 - DVU1880 0.76 -0.3
1,949,262 - DVU1880 0.78 -0.0
1,949,344 - -0.5
1,949,385 + -0.2
1,949,441 - +1.0
1,949,540 + -2.6
1,949,635 - +0.1
1,949,662 - -3.4
1,949,791 + phoH DVU1881 0.22 -0.0
1,949,791 + phoH DVU1881 0.22 +0.1
1,949,791 + phoH DVU1881 0.22 -0.6
1,949,791 + phoH DVU1881 0.22 +0.3
1,949,799 - phoH DVU1881 0.23 -0.1
1,949,799 - phoH DVU1881 0.23 +0.0
1,949,822 + phoH DVU1881 0.25 -3.6
1,949,825 - phoH DVU1881 0.25 -0.2
1,949,833 + phoH DVU1881 0.26 -0.4
1,950,036 + phoH DVU1881 0.46 +0.8
1,950,054 - phoH DVU1881 0.48 -3.3
1,950,074 + phoH DVU1881 0.50 +0.0
1,950,150 - phoH DVU1881 0.57 -2.6
1,950,176 - phoH DVU1881 0.60 +0.1
1,950,227 - phoH DVU1881 0.65 +0.0
1,950,271 + phoH DVU1881 0.69 +0.0
1,950,299 + phoH DVU1881 0.72 +0.1
1,950,322 + phoH DVU1881 0.74 +0.0

Or see this region's nucleotide sequence