Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1836

Experiment: MoLS4 with L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1835 and cca are separated by 49 nucleotidescca and DVU1837 are separated by 100 nucleotidesDVU1837 and trxB-2 overlap by 59 nucleotides DVU1835: DVU1835 - biotin--acetyl-CoA-carboxylase ligase (TIGR), at 1,905,994 to 1,906,926 DVU1835 DVU1836: cca - tRNA nucleotidyltransferase, putative (TIGR), at 1,906,976 to 1,908,127 cca DVU1837: DVU1837 - competence protein, putative (TIGR), at 1,908,228 to 1,909,010 DVU1837 DVU1838: trxB-2 - thioredoxin reductase (TIGR), at 1,908,952 to 1,909,875 trxB-2 Position (kb) 1906 1907 1908 1909Strain fitness (log2 ratio) -3 -2 -1 0 1at 1907.011 kb on - strandat 1907.030 kb on - strandat 1907.030 kb on - strandat 1907.036 kb on + strandat 1907.104 kb on + strand, within ccaat 1907.104 kb on + strand, within ccaat 1907.146 kb on - strand, within ccaat 1907.153 kb on + strand, within ccaat 1907.161 kb on - strand, within ccaat 1907.166 kb on - strand, within ccaat 1907.172 kb on + strand, within ccaat 1907.253 kb on - strand, within ccaat 1907.263 kb on + strand, within ccaat 1907.277 kb on - strand, within ccaat 1907.324 kb on + strand, within ccaat 1907.380 kb on - strand, within ccaat 1907.419 kb on - strand, within ccaat 1907.551 kb on + strand, within ccaat 1907.844 kb on + strand, within ccaat 1907.876 kb on - strand, within ccaat 1907.887 kb on - strand, within ccaat 1907.899 kb on + strand, within ccaat 1907.907 kb on - strand, within ccaat 1907.951 kb on + strand, within ccaat 1907.995 kb on - strand, within ccaat 1908.083 kb on - strandat 1908.974 kb on - strandat 1909.046 kb on - strand, within trxB-2

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
remove
1,907,011 - -0.4
1,907,030 - -0.4
1,907,030 - -2.9
1,907,036 + -0.5
1,907,104 + cca DVU1836 0.11 +0.0
1,907,104 + cca DVU1836 0.11 +0.0
1,907,146 - cca DVU1836 0.15 +0.5
1,907,153 + cca DVU1836 0.15 +0.5
1,907,161 - cca DVU1836 0.16 -0.0
1,907,166 - cca DVU1836 0.16 -0.2
1,907,172 + cca DVU1836 0.17 -0.2
1,907,253 - cca DVU1836 0.24 -0.2
1,907,263 + cca DVU1836 0.25 -0.8
1,907,277 - cca DVU1836 0.26 +0.5
1,907,324 + cca DVU1836 0.30 +0.1
1,907,380 - cca DVU1836 0.35 -0.4
1,907,419 - cca DVU1836 0.38 +0.8
1,907,551 + cca DVU1836 0.50 -0.7
1,907,844 + cca DVU1836 0.75 +0.2
1,907,876 - cca DVU1836 0.78 +0.5
1,907,887 - cca DVU1836 0.79 -0.1
1,907,899 + cca DVU1836 0.80 -1.1
1,907,907 - cca DVU1836 0.81 -0.0
1,907,951 + cca DVU1836 0.85 +0.1
1,907,995 - cca DVU1836 0.88 +0.4
1,908,083 - +0.2
1,908,974 - +0.3
1,909,046 - trxB-2 DVU1838 0.10 +0.1

Or see this region's nucleotide sequence