Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1725

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1724 and DVU1725 overlap by 14 nucleotidesDVU1725 and DVU1726 are separated by 135 nucleotidesDVU1726 and DVU1727 overlap by 4 nucleotidesDVU1727 and DVU1728 overlap by 1 nucleotides DVU1724: DVU1724 - phage uncharacterized protein, putative (TIGR), at 1,797,329 to 1,798,933 DVU1724 DVU1725: DVU1725 - conserved hypothetical protein (TIGR), at 1,798,920 to 1,799,528 DVU1725 DVU1726: DVU1726 - hypothetical protein (TIGR), at 1,799,664 to 1,799,912 DVU1726 DVU1727: DVU1727 - hypothetical protein (TIGR), at 1,799,909 to 1,800,259 DVU1727 DVU1728: DVU1728 - conserved hypothetical protein (TIGR), at 1,800,259 to 1,800,675 DVU1728 Position (kb) 1798 1799 1800Strain fitness (log2 ratio) -3 -2 -1 0 1at 1797.934 kb on - strand, within DVU1724at 1797.967 kb on + strand, within DVU1724at 1797.985 kb on + strand, within DVU1724at 1798.032 kb on + strand, within DVU1724at 1798.032 kb on + strand, within DVU1724at 1798.032 kb on + strand, within DVU1724at 1798.203 kb on + strand, within DVU1724at 1798.244 kb on - strand, within DVU1724at 1798.263 kb on - strand, within DVU1724at 1798.281 kb on - strand, within DVU1724at 1798.288 kb on - strand, within DVU1724at 1798.341 kb on + strand, within DVU1724at 1798.376 kb on - strand, within DVU1724at 1798.399 kb on - strand, within DVU1724at 1798.407 kb on - strand, within DVU1724at 1798.414 kb on + strand, within DVU1724at 1798.414 kb on + strand, within DVU1724at 1798.421 kb on - strand, within DVU1724at 1798.422 kb on - strand, within DVU1724at 1798.446 kb on + strand, within DVU1724at 1798.498 kb on + strand, within DVU1724at 1798.527 kb on - strand, within DVU1724at 1798.578 kb on - strand, within DVU1724at 1798.600 kb on + strand, within DVU1724at 1798.614 kb on + strand, within DVU1724at 1798.692 kb on - strand, within DVU1724at 1798.731 kb on + strand, within DVU1724at 1798.787 kb on - strandat 1798.789 kb on + strandat 1798.789 kb on + strandat 1798.797 kb on - strandat 1798.797 kb on - strandat 1798.797 kb on - strandat 1798.797 kb on - strandat 1798.858 kb on + strandat 1798.858 kb on + strandat 1798.861 kb on - strandat 1798.933 kb on - strandat 1798.938 kb on - strandat 1799.036 kb on + strand, within DVU1725at 1799.044 kb on - strand, within DVU1725at 1799.141 kb on + strand, within DVU1725at 1799.149 kb on - strand, within DVU1725at 1799.171 kb on + strand, within DVU1725at 1799.171 kb on + strand, within DVU1725at 1799.179 kb on - strand, within DVU1725at 1799.179 kb on - strand, within DVU1725at 1799.218 kb on + strand, within DVU1725at 1799.224 kb on + strand, within DVU1725at 1799.225 kb on - strand, within DVU1725at 1799.274 kb on + strand, within DVU1725at 1799.287 kb on + strand, within DVU1725at 1799.397 kb on + strand, within DVU1725at 1799.433 kb on - strand, within DVU1725at 1799.524 kb on + strandat 1799.806 kb on - strand, within DVU1726at 1799.970 kb on - strand, within DVU1727at 1799.994 kb on + strand, within DVU1727at 1800.048 kb on - strand, within DVU1727at 1800.064 kb on + strand, within DVU1727

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,797,934 - DVU1724 0.38 +0.3
1,797,967 + DVU1724 0.40 -1.1
1,797,985 + DVU1724 0.41 -0.4
1,798,032 + DVU1724 0.44 -0.0
1,798,032 + DVU1724 0.44 -3.1
1,798,032 + DVU1724 0.44 +0.2
1,798,203 + DVU1724 0.54 -0.0
1,798,244 - DVU1724 0.57 -0.6
1,798,263 - DVU1724 0.58 -0.5
1,798,281 - DVU1724 0.59 -0.6
1,798,288 - DVU1724 0.60 +0.7
1,798,341 + DVU1724 0.63 -0.2
1,798,376 - DVU1724 0.65 -0.2
1,798,399 - DVU1724 0.67 -0.0
1,798,407 - DVU1724 0.67 -0.0
1,798,414 + DVU1724 0.68 +0.1
1,798,414 + DVU1724 0.68 -1.0
1,798,421 - DVU1724 0.68 -0.6
1,798,422 - DVU1724 0.68 -2.3
1,798,446 + DVU1724 0.70 -1.1
1,798,498 + DVU1724 0.73 +0.5
1,798,527 - DVU1724 0.75 -0.2
1,798,578 - DVU1724 0.78 -0.0
1,798,600 + DVU1724 0.79 -0.2
1,798,614 + DVU1724 0.80 -0.6
1,798,692 - DVU1724 0.85 +0.2
1,798,731 + DVU1724 0.87 -0.2
1,798,787 - +0.1
1,798,789 + -0.7
1,798,789 + +1.1
1,798,797 - -0.5
1,798,797 - -2.5
1,798,797 - +0.5
1,798,797 - -0.2
1,798,858 + -2.3
1,798,858 + -0.1
1,798,861 - -0.7
1,798,933 - -1.4
1,798,938 - -0.3
1,799,036 + DVU1725 0.19 -0.2
1,799,044 - DVU1725 0.20 -2.8
1,799,141 + DVU1725 0.36 +0.3
1,799,149 - DVU1725 0.38 -0.0
1,799,171 + DVU1725 0.41 -3.1
1,799,171 + DVU1725 0.41 +0.2
1,799,179 - DVU1725 0.43 +0.5
1,799,179 - DVU1725 0.43 -0.6
1,799,218 + DVU1725 0.49 -0.6
1,799,224 + DVU1725 0.50 -0.5
1,799,225 - DVU1725 0.50 -0.1
1,799,274 + DVU1725 0.58 -0.1
1,799,287 + DVU1725 0.60 -0.8
1,799,397 + DVU1725 0.78 -3.1
1,799,433 - DVU1725 0.84 -0.3
1,799,524 + +0.6
1,799,806 - DVU1726 0.57 -0.9
1,799,970 - DVU1727 0.17 -0.1
1,799,994 + DVU1727 0.24 -1.1
1,800,048 - DVU1727 0.40 -2.6
1,800,064 + DVU1727 0.44 -0.4

Or see this region's nucleotide sequence