Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1714

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1712 and DVU1713 overlap by 31 nucleotidesDVU1713 and DVU1714 are separated by 8 nucleotidesDVU1714 and DVU1715 are separated by 172 nucleotidesDVU1715 and DVU1716 are separated by 41 nucleotides DVU1712: DVU1712 - hypothetical protein (TIGR), at 1,786,746 to 1,788,347 DVU1712 DVU1713: DVU1713 - hypothetical protein (TIGR), at 1,788,317 to 1,788,952 DVU1713 DVU1714: DVU1714 - conserved hypothetical protein (TIGR), at 1,788,961 to 1,791,054 DVU1714 DVU1715: DVU1715 - hypothetical protein (TIGR), at 1,791,227 to 1,791,814 DVU1715 DVU1716: DVU1716 - hypothetical protein (TIGR), at 1,791,856 to 1,792,200 DVU1716 Position (kb) 1788 1789 1790 1791 1792Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1788.027 kb on - strand, within DVU1712at 1788.074 kb on + strand, within DVU1712at 1788.160 kb on + strand, within DVU1712at 1788.265 kb on - strandat 1788.300 kb on - strandat 1788.397 kb on - strand, within DVU1713at 1788.412 kb on - strand, within DVU1713at 1788.498 kb on - strand, within DVU1713at 1788.505 kb on - strand, within DVU1713at 1788.595 kb on - strand, within DVU1713at 1788.647 kb on + strand, within DVU1713at 1788.647 kb on + strand, within DVU1713at 1788.647 kb on + strand, within DVU1713at 1788.667 kb on + strand, within DVU1713at 1788.671 kb on + strand, within DVU1713at 1788.677 kb on + strand, within DVU1713at 1788.677 kb on + strand, within DVU1713at 1788.677 kb on + strand, within DVU1713at 1788.677 kb on + strand, within DVU1713at 1788.680 kb on - strand, within DVU1713at 1788.685 kb on - strand, within DVU1713at 1788.713 kb on + strand, within DVU1713at 1788.721 kb on - strand, within DVU1713at 1788.776 kb on - strand, within DVU1713at 1788.776 kb on - strand, within DVU1713at 1788.788 kb on + strand, within DVU1713at 1788.805 kb on + strand, within DVU1713at 1788.825 kb on + strand, within DVU1713at 1788.887 kb on - strand, within DVU1713at 1788.998 kb on - strandat 1789.032 kb on + strandat 1789.045 kb on + strandat 1789.053 kb on - strandat 1789.053 kb on - strandat 1789.053 kb on - strandat 1789.053 kb on - strandat 1789.159 kb on - strandat 1789.159 kb on - strandat 1789.172 kb on + strand, within DVU1714at 1789.175 kb on - strand, within DVU1714at 1789.187 kb on + strand, within DVU1714at 1789.201 kb on - strand, within DVU1714at 1789.260 kb on - strand, within DVU1714at 1789.284 kb on - strand, within DVU1714at 1789.378 kb on - strand, within DVU1714at 1789.749 kb on + strand, within DVU1714at 1789.768 kb on + strand, within DVU1714at 1789.778 kb on - strand, within DVU1714at 1789.790 kb on + strand, within DVU1714at 1789.798 kb on - strand, within DVU1714at 1789.814 kb on - strand, within DVU1714at 1789.884 kb on - strand, within DVU1714at 1789.978 kb on + strand, within DVU1714at 1790.159 kb on - strand, within DVU1714at 1790.225 kb on - strand, within DVU1714at 1790.348 kb on + strand, within DVU1714at 1790.389 kb on - strand, within DVU1714at 1790.412 kb on - strand, within DVU1714at 1790.449 kb on + strand, within DVU1714at 1790.545 kb on - strand, within DVU1714at 1790.727 kb on - strand, within DVU1714at 1790.738 kb on + strand, within DVU1714at 1790.805 kb on + strand, within DVU1714at 1790.871 kb on + strandat 1790.898 kb on + strandat 1790.901 kb on - strandat 1790.906 kb on - strandat 1791.001 kb on + strandat 1791.038 kb on + strandat 1791.038 kb on + strandat 1791.046 kb on - strandat 1791.046 kb on - strandat 1791.046 kb on - strandat 1791.167 kb on - strandat 1791.232 kb on - strandat 1791.273 kb on - strandat 1791.292 kb on - strand, within DVU1715at 1791.297 kb on + strand, within DVU1715at 1791.390 kb on - strand, within DVU1715at 1791.432 kb on - strand, within DVU1715at 1791.521 kb on + strand, within DVU1715at 1791.550 kb on - strand, within DVU1715at 1791.550 kb on - strand, within DVU1715at 1791.597 kb on - strand, within DVU1715at 1791.632 kb on - strand, within DVU1715at 1791.711 kb on + strand, within DVU1715at 1791.756 kb on + strandat 1791.847 kb on - strandat 1791.847 kb on - strandat 1791.905 kb on - strand, within DVU1716at 1791.919 kb on + strand, within DVU1716at 1791.927 kb on - strand, within DVU1716at 1791.927 kb on - strand, within DVU1716at 1791.942 kb on - strand, within DVU1716at 1792.009 kb on + strand, within DVU1716

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,788,027 - DVU1712 0.80 -0.5
1,788,074 + DVU1712 0.83 -0.3
1,788,160 + DVU1712 0.88 +0.3
1,788,265 - -3.4
1,788,300 - +1.3
1,788,397 - DVU1713 0.13 -0.5
1,788,412 - DVU1713 0.15 -0.4
1,788,498 - DVU1713 0.28 +0.5
1,788,505 - DVU1713 0.30 -0.4
1,788,595 - DVU1713 0.44 +0.1
1,788,647 + DVU1713 0.52 +0.6
1,788,647 + DVU1713 0.52 -0.1
1,788,647 + DVU1713 0.52 -0.4
1,788,667 + DVU1713 0.55 -2.7
1,788,671 + DVU1713 0.56 +0.2
1,788,677 + DVU1713 0.57 +0.3
1,788,677 + DVU1713 0.57 +0.1
1,788,677 + DVU1713 0.57 -1.8
1,788,677 + DVU1713 0.57 +2.1
1,788,680 - DVU1713 0.57 -0.9
1,788,685 - DVU1713 0.58 +0.2
1,788,713 + DVU1713 0.62 -0.0
1,788,721 - DVU1713 0.64 +0.8
1,788,776 - DVU1713 0.72 +0.3
1,788,776 - DVU1713 0.72 +0.2
1,788,788 + DVU1713 0.74 -0.2
1,788,805 + DVU1713 0.77 +0.3
1,788,825 + DVU1713 0.80 -3.1
1,788,887 - DVU1713 0.90 -0.1
1,788,998 - +1.7
1,789,032 + -0.3
1,789,045 + -2.9
1,789,053 - -0.9
1,789,053 - -0.6
1,789,053 - -0.1
1,789,053 - -2.6
1,789,159 - -3.0
1,789,159 - -0.2
1,789,172 + DVU1714 0.10 +0.8
1,789,175 - DVU1714 0.10 -0.4
1,789,187 + DVU1714 0.11 -3.3
1,789,201 - DVU1714 0.11 -0.4
1,789,260 - DVU1714 0.14 +0.1
1,789,284 - DVU1714 0.15 -3.3
1,789,378 - DVU1714 0.20 -3.3
1,789,749 + DVU1714 0.38 -0.1
1,789,768 + DVU1714 0.39 -0.6
1,789,778 - DVU1714 0.39 -1.3
1,789,790 + DVU1714 0.40 -0.3
1,789,798 - DVU1714 0.40 -0.4
1,789,814 - DVU1714 0.41 -0.7
1,789,884 - DVU1714 0.44 -0.3
1,789,978 + DVU1714 0.49 +0.1
1,790,159 - DVU1714 0.57 +0.5
1,790,225 - DVU1714 0.60 +0.1
1,790,348 + DVU1714 0.66 +0.5
1,790,389 - DVU1714 0.68 +0.2
1,790,412 - DVU1714 0.69 +0.8
1,790,449 + DVU1714 0.71 -2.1
1,790,545 - DVU1714 0.76 -0.3
1,790,727 - DVU1714 0.84 -0.3
1,790,738 + DVU1714 0.85 -0.5
1,790,805 + DVU1714 0.88 -0.2
1,790,871 + -0.2
1,790,898 + -0.2
1,790,901 - -0.3
1,790,906 - +1.1
1,791,001 + +0.0
1,791,038 + +0.4
1,791,038 + +0.1
1,791,046 - -0.7
1,791,046 - +0.1
1,791,046 - -0.5
1,791,167 - -0.2
1,791,232 - -0.6
1,791,273 - +0.9
1,791,292 - DVU1715 0.11 -3.4
1,791,297 + DVU1715 0.12 +0.4
1,791,390 - DVU1715 0.28 +0.1
1,791,432 - DVU1715 0.35 -0.1
1,791,521 + DVU1715 0.50 +1.4
1,791,550 - DVU1715 0.55 +0.0
1,791,550 - DVU1715 0.55 +0.1
1,791,597 - DVU1715 0.63 -0.5
1,791,632 - DVU1715 0.69 -0.0
1,791,711 + DVU1715 0.82 +0.0
1,791,756 + +0.1
1,791,847 - +2.5
1,791,847 - -0.2
1,791,905 - DVU1716 0.14 -0.5
1,791,919 + DVU1716 0.18 -0.0
1,791,927 - DVU1716 0.21 +0.0
1,791,927 - DVU1716 0.21 -0.2
1,791,942 - DVU1716 0.25 -0.3
1,792,009 + DVU1716 0.44 -0.5

Or see this region's nucleotide sequence