Experiment: MoLS4 with L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1690 and DVU1692 are separated by 299 nucleotides DVU1692 and gltX-1 are separated by 170 nucleotides gltX-1 and tRNA-Arg are separated by 118 nucleotides tRNA-Arg and DVU1694 are separated by 98 nucleotides DVU1694 and DVU1695 are separated by 15 nucleotides
DVU1690: DVU1690 - transcriptional regulator, TetR family (TIGR), at 1,768,176 to 1,768,745
DVU1690
DVU1692: DVU1692 - hypothetical protein (TIGR), at 1,769,045 to 1,769,440
DVU1692
DVU1693: gltX-1 - glutamyl-tRNA synthetase (TIGR), at 1,769,611 to 1,770,585
gltX-1
DVU_tRNA-Arg-4: tRNA-Arg - tRNA with anticodon CCT for Arg (VIMSS-AUTO), at 1,770,704 to 1,770,780
tRNA-Arg
DVU1694: DVU1694 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 1,770,879 to 1,771,088
DVU1694
DVU1695: DVU1695 - tail fiber assembly protein, putative (TIGR), at 1,771,104 to 1,771,613
DVU1695
Position (kb)
1769
1770
1771 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1768.744 kb on + strand at 1768.763 kb on + strand at 1768.870 kb on + strand at 1768.878 kb on - strand at 1768.943 kb on - strand at 1768.951 kb on - strand at 1769.006 kb on + strand at 1769.351 kb on - strand, within DVU1692 at 1769.392 kb on - strand, within DVU1692 at 1769.458 kb on - strand at 1769.487 kb on + strand at 1769.487 kb on + strand at 1769.495 kb on - strand at 1769.618 kb on + strand at 1769.626 kb on - strand at 1769.882 kb on + strand, within gltX-1 at 1769.890 kb on - strand, within gltX-1 at 1769.904 kb on + strand, within gltX-1 at 1769.921 kb on - strand, within gltX-1 at 1770.072 kb on + strand, within gltX-1 at 1770.108 kb on - strand, within gltX-1 at 1770.121 kb on + strand, within gltX-1 at 1770.184 kb on + strand, within gltX-1 at 1770.312 kb on + strand, within gltX-1 at 1770.322 kb on + strand, within gltX-1 at 1770.322 kb on + strand, within gltX-1 at 1770.330 kb on - strand, within gltX-1 at 1770.330 kb on - strand, within gltX-1 at 1770.390 kb on - strand, within gltX-1 at 1770.532 kb on - strand at 1770.871 kb on + strand at 1770.881 kb on + strand at 1770.900 kb on - strand, within DVU1694 at 1770.927 kb on - strand, within DVU1694 at 1770.936 kb on + strand, within DVU1694 at 1770.945 kb on - strand, within DVU1694 at 1771.052 kb on - strand, within DVU1694 at 1771.059 kb on + strand, within DVU1694 at 1771.124 kb on - strand at 1771.124 kb on - strand at 1771.137 kb on - strand at 1771.183 kb on - strand, within DVU1695 at 1771.353 kb on - strand, within DVU1695 at 1771.353 kb on - strand, within DVU1695 at 1771.353 kb on - strand, within DVU1695 at 1771.492 kb on + strand, within DVU1695 at 1771.519 kb on + strand, within DVU1695 at 1771.527 kb on - strand, within DVU1695 at 1771.527 kb on - strand, within DVU1695
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N) remove 1,768,744 + -3.1 1,768,763 + -0.2 1,768,870 + -1.4 1,768,878 - -0.3 1,768,943 - -0.3 1,768,951 - -0.6 1,769,006 + +0.1 1,769,351 - DVU1692 0.77 -3.5 1,769,392 - DVU1692 0.88 -3.0 1,769,458 - +1.1 1,769,487 + -2.9 1,769,487 + -0.2 1,769,495 - -0.8 1,769,618 + -0.5 1,769,626 - -0.1 1,769,882 + gltX-1 DVU1693 0.28 -3.4 1,769,890 - gltX-1 DVU1693 0.29 -2.0 1,769,904 + gltX-1 DVU1693 0.30 +1.0 1,769,921 - gltX-1 DVU1693 0.32 -4.3 1,770,072 + gltX-1 DVU1693 0.47 -0.2 1,770,108 - gltX-1 DVU1693 0.51 -3.6 1,770,121 + gltX-1 DVU1693 0.52 -0.4 1,770,184 + gltX-1 DVU1693 0.59 -0.3 1,770,312 + gltX-1 DVU1693 0.72 -0.2 1,770,322 + gltX-1 DVU1693 0.73 -0.1 1,770,322 + gltX-1 DVU1693 0.73 -0.6 1,770,330 - gltX-1 DVU1693 0.74 -0.4 1,770,330 - gltX-1 DVU1693 0.74 -0.7 1,770,390 - gltX-1 DVU1693 0.80 -0.5 1,770,532 - -3.7 1,770,871 + -0.2 1,770,881 + -0.4 1,770,900 - DVU1694 0.10 -0.3 1,770,927 - DVU1694 0.23 +0.9 1,770,936 + DVU1694 0.27 +1.0 1,770,945 - DVU1694 0.31 -0.7 1,771,052 - DVU1694 0.82 -0.2 1,771,059 + DVU1694 0.86 +0.5 1,771,124 - -0.5 1,771,124 - -2.4 1,771,137 - +0.7 1,771,183 - DVU1695 0.15 -0.1 1,771,353 - DVU1695 0.49 +0.8 1,771,353 - DVU1695 0.49 -0.4 1,771,353 - DVU1695 0.49 +0.2 1,771,492 + DVU1695 0.76 -0.3 1,771,519 + DVU1695 0.81 +1.1 1,771,527 - DVU1695 0.83 +0.5 1,771,527 - DVU1695 0.83 +1.3
Or see this region's nucleotide sequence