Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1693

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1690 and DVU1692 are separated by 299 nucleotidesDVU1692 and gltX-1 are separated by 170 nucleotidesgltX-1 and tRNA-Arg are separated by 118 nucleotidestRNA-Arg and DVU1694 are separated by 98 nucleotidesDVU1694 and DVU1695 are separated by 15 nucleotides DVU1690: DVU1690 - transcriptional regulator, TetR family (TIGR), at 1,768,176 to 1,768,745 DVU1690 DVU1692: DVU1692 - hypothetical protein (TIGR), at 1,769,045 to 1,769,440 DVU1692 DVU1693: gltX-1 - glutamyl-tRNA synthetase (TIGR), at 1,769,611 to 1,770,585 gltX-1 DVU_tRNA-Arg-4: tRNA-Arg - tRNA with anticodon CCT for Arg (VIMSS-AUTO), at 1,770,704 to 1,770,780 tRNA-Arg DVU1694: DVU1694 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 1,770,879 to 1,771,088 DVU1694 DVU1695: DVU1695 - tail fiber assembly protein, putative (TIGR), at 1,771,104 to 1,771,613 DVU1695 Position (kb) 1769 1770 1771Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1768.744 kb on + strandat 1768.763 kb on + strandat 1768.870 kb on + strandat 1768.878 kb on - strandat 1768.943 kb on - strandat 1768.951 kb on - strandat 1769.006 kb on + strandat 1769.351 kb on - strand, within DVU1692at 1769.392 kb on - strand, within DVU1692at 1769.458 kb on - strandat 1769.487 kb on + strandat 1769.487 kb on + strandat 1769.495 kb on - strandat 1769.618 kb on + strandat 1769.626 kb on - strandat 1769.882 kb on + strand, within gltX-1at 1769.890 kb on - strand, within gltX-1at 1769.904 kb on + strand, within gltX-1at 1769.921 kb on - strand, within gltX-1at 1770.072 kb on + strand, within gltX-1at 1770.108 kb on - strand, within gltX-1at 1770.121 kb on + strand, within gltX-1at 1770.184 kb on + strand, within gltX-1at 1770.312 kb on + strand, within gltX-1at 1770.322 kb on + strand, within gltX-1at 1770.322 kb on + strand, within gltX-1at 1770.330 kb on - strand, within gltX-1at 1770.330 kb on - strand, within gltX-1at 1770.390 kb on - strand, within gltX-1at 1770.532 kb on - strandat 1770.871 kb on + strandat 1770.881 kb on + strandat 1770.900 kb on - strand, within DVU1694at 1770.927 kb on - strand, within DVU1694at 1770.936 kb on + strand, within DVU1694at 1770.945 kb on - strand, within DVU1694at 1771.052 kb on - strand, within DVU1694at 1771.059 kb on + strand, within DVU1694at 1771.124 kb on - strandat 1771.124 kb on - strandat 1771.137 kb on - strandat 1771.183 kb on - strand, within DVU1695at 1771.353 kb on - strand, within DVU1695at 1771.353 kb on - strand, within DVU1695at 1771.353 kb on - strand, within DVU1695at 1771.492 kb on + strand, within DVU1695at 1771.519 kb on + strand, within DVU1695at 1771.527 kb on - strand, within DVU1695at 1771.527 kb on - strand, within DVU1695

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,768,744 + -3.1
1,768,763 + -0.2
1,768,870 + -1.4
1,768,878 - -0.3
1,768,943 - -0.3
1,768,951 - -0.6
1,769,006 + +0.1
1,769,351 - DVU1692 0.77 -3.5
1,769,392 - DVU1692 0.88 -3.0
1,769,458 - +1.1
1,769,487 + -2.9
1,769,487 + -0.2
1,769,495 - -0.8
1,769,618 + -0.5
1,769,626 - -0.1
1,769,882 + gltX-1 DVU1693 0.28 -3.4
1,769,890 - gltX-1 DVU1693 0.29 -2.0
1,769,904 + gltX-1 DVU1693 0.30 +1.0
1,769,921 - gltX-1 DVU1693 0.32 -4.3
1,770,072 + gltX-1 DVU1693 0.47 -0.2
1,770,108 - gltX-1 DVU1693 0.51 -3.6
1,770,121 + gltX-1 DVU1693 0.52 -0.4
1,770,184 + gltX-1 DVU1693 0.59 -0.3
1,770,312 + gltX-1 DVU1693 0.72 -0.2
1,770,322 + gltX-1 DVU1693 0.73 -0.1
1,770,322 + gltX-1 DVU1693 0.73 -0.6
1,770,330 - gltX-1 DVU1693 0.74 -0.4
1,770,330 - gltX-1 DVU1693 0.74 -0.7
1,770,390 - gltX-1 DVU1693 0.80 -0.5
1,770,532 - -3.7
1,770,871 + -0.2
1,770,881 + -0.4
1,770,900 - DVU1694 0.10 -0.3
1,770,927 - DVU1694 0.23 +0.9
1,770,936 + DVU1694 0.27 +1.0
1,770,945 - DVU1694 0.31 -0.7
1,771,052 - DVU1694 0.82 -0.2
1,771,059 + DVU1694 0.86 +0.5
1,771,124 - -0.5
1,771,124 - -2.4
1,771,137 - +0.7
1,771,183 - DVU1695 0.15 -0.1
1,771,353 - DVU1695 0.49 +0.8
1,771,353 - DVU1695 0.49 -0.4
1,771,353 - DVU1695 0.49 +0.2
1,771,492 + DVU1695 0.76 -0.3
1,771,519 + DVU1695 0.81 +1.1
1,771,527 - DVU1695 0.83 +0.5
1,771,527 - DVU1695 0.83 +1.3

Or see this region's nucleotide sequence