Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1547

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1545 and DVU1547 are separated by 466 nucleotidesDVU1547 and DVU1548 are separated by 150 nucleotides DVU1545: DVU1545 - hemolysin-type calcium-binding repeat/calx-beta domain protein (TIGR), at 1,614,477 to 1,621,721 DVU1545 DVU1547: DVU1547 - sensory box protein (TIGR), at 1,622,188 to 1,623,813 DVU1547 DVU1548: DVU1548 - outer membrane transport protein, OmpP1/FadL/TodX family (TIGR), at 1,623,964 to 1,625,178 DVU1548 Position (kb) 1622 1623 1624Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1621.202 kb on - strandat 1621.237 kb on - strandat 1621.272 kb on + strandat 1621.280 kb on - strandat 1621.336 kb on - strandat 1621.338 kb on + strandat 1621.344 kb on + strandat 1621.361 kb on + strandat 1621.544 kb on + strandat 1621.552 kb on - strandat 1621.676 kb on - strandat 1621.686 kb on - strandat 1621.717 kb on + strandat 1621.725 kb on - strandat 1621.727 kb on + strandat 1621.737 kb on - strandat 1621.756 kb on + strandat 1621.764 kb on - strandat 1621.855 kb on + strandat 1621.865 kb on + strandat 1621.868 kb on - strandat 1621.868 kb on - strandat 1621.868 kb on - strandat 1621.868 kb on - strandat 1621.900 kb on - strandat 1622.118 kb on + strandat 1622.135 kb on - strandat 1622.159 kb on - strandat 1622.228 kb on - strandat 1622.276 kb on + strandat 1622.338 kb on + strandat 1622.346 kb on - strandat 1622.400 kb on - strand, within DVU1547at 1622.483 kb on + strand, within DVU1547at 1622.506 kb on - strand, within DVU1547at 1622.542 kb on - strand, within DVU1547at 1622.561 kb on - strand, within DVU1547at 1622.613 kb on + strand, within DVU1547at 1622.614 kb on + strand, within DVU1547at 1622.622 kb on - strand, within DVU1547at 1622.639 kb on - strand, within DVU1547at 1622.639 kb on - strand, within DVU1547at 1622.679 kb on + strand, within DVU1547at 1622.687 kb on - strand, within DVU1547at 1622.747 kb on - strand, within DVU1547at 1622.800 kb on - strand, within DVU1547at 1622.902 kb on + strand, within DVU1547at 1622.943 kb on + strand, within DVU1547at 1623.038 kb on + strand, within DVU1547at 1623.075 kb on + strand, within DVU1547at 1623.113 kb on + strand, within DVU1547at 1623.129 kb on + strand, within DVU1547at 1623.237 kb on - strand, within DVU1547at 1623.237 kb on - strand, within DVU1547at 1623.267 kb on + strand, within DVU1547at 1623.381 kb on + strand, within DVU1547at 1623.403 kb on + strand, within DVU1547at 1623.403 kb on + strand, within DVU1547at 1623.466 kb on + strand, within DVU1547at 1623.474 kb on - strand, within DVU1547at 1623.476 kb on - strand, within DVU1547at 1623.535 kb on - strand, within DVU1547at 1623.563 kb on + strand, within DVU1547at 1623.619 kb on - strand, within DVU1547at 1623.619 kb on - strand, within DVU1547at 1623.626 kb on + strand, within DVU1547at 1623.626 kb on + strand, within DVU1547at 1623.635 kb on - strand, within DVU1547at 1623.659 kb on + strandat 1623.684 kb on - strandat 1623.954 kb on + strandat 1624.033 kb on - strandat 1624.134 kb on + strand, within DVU1548at 1624.142 kb on - strand, within DVU1548at 1624.227 kb on + strand, within DVU1548at 1624.403 kb on + strand, within DVU1548at 1624.477 kb on + strand, within DVU1548at 1624.552 kb on - strand, within DVU1548at 1624.570 kb on + strand, within DVU1548at 1624.570 kb on + strand, within DVU1548at 1624.578 kb on - strand, within DVU1548at 1624.660 kb on + strand, within DVU1548at 1624.699 kb on - strand, within DVU1548at 1624.718 kb on + strand, within DVU1548

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,621,202 - -2.2
1,621,237 - -0.3
1,621,272 + -0.4
1,621,280 - +0.4
1,621,336 - -0.0
1,621,338 + -3.0
1,621,344 + +0.0
1,621,361 + +0.3
1,621,544 + -0.4
1,621,552 - +0.2
1,621,676 - +0.3
1,621,686 - -0.5
1,621,717 + -0.1
1,621,725 - -0.9
1,621,727 + +0.1
1,621,737 - -0.7
1,621,756 + -0.6
1,621,764 - -3.3
1,621,855 + -0.7
1,621,865 + -0.3
1,621,868 - -0.4
1,621,868 - +0.6
1,621,868 - +0.4
1,621,868 - +0.2
1,621,900 - +0.2
1,622,118 + -0.4
1,622,135 - -0.4
1,622,159 - -0.4
1,622,228 - -3.1
1,622,276 + +0.0
1,622,338 + -3.9
1,622,346 - -0.6
1,622,400 - DVU1547 0.13 -2.7
1,622,483 + DVU1547 0.18 +0.5
1,622,506 - DVU1547 0.20 -0.9
1,622,542 - DVU1547 0.22 -3.2
1,622,561 - DVU1547 0.23 +0.2
1,622,613 + DVU1547 0.26 +0.0
1,622,614 + DVU1547 0.26 +0.4
1,622,622 - DVU1547 0.27 -0.1
1,622,639 - DVU1547 0.28 -0.5
1,622,639 - DVU1547 0.28 +1.2
1,622,679 + DVU1547 0.30 +0.0
1,622,687 - DVU1547 0.31 -0.8
1,622,747 - DVU1547 0.34 +0.1
1,622,800 - DVU1547 0.38 +0.6
1,622,902 + DVU1547 0.44 -0.4
1,622,943 + DVU1547 0.46 -0.3
1,623,038 + DVU1547 0.52 -0.0
1,623,075 + DVU1547 0.55 -0.3
1,623,113 + DVU1547 0.57 -0.1
1,623,129 + DVU1547 0.58 -0.3
1,623,237 - DVU1547 0.65 -0.3
1,623,237 - DVU1547 0.65 +0.0
1,623,267 + DVU1547 0.66 -3.0
1,623,381 + DVU1547 0.73 -3.7
1,623,403 + DVU1547 0.75 -0.3
1,623,403 + DVU1547 0.75 -3.2
1,623,466 + DVU1547 0.79 +0.1
1,623,474 - DVU1547 0.79 -0.5
1,623,476 - DVU1547 0.79 +0.1
1,623,535 - DVU1547 0.83 -0.4
1,623,563 + DVU1547 0.85 +0.4
1,623,619 - DVU1547 0.88 -0.1
1,623,619 - DVU1547 0.88 +0.2
1,623,626 + DVU1547 0.88 -0.2
1,623,626 + DVU1547 0.88 -0.9
1,623,635 - DVU1547 0.89 -0.7
1,623,659 + +0.1
1,623,684 - +0.1
1,623,954 + +0.1
1,624,033 - -0.2
1,624,134 + DVU1548 0.14 -0.2
1,624,142 - DVU1548 0.15 -0.1
1,624,227 + DVU1548 0.22 -1.5
1,624,403 + DVU1548 0.36 +0.2
1,624,477 + DVU1548 0.42 -0.4
1,624,552 - DVU1548 0.48 +0.2
1,624,570 + DVU1548 0.50 -0.4
1,624,570 + DVU1548 0.50 -0.5
1,624,578 - DVU1548 0.51 -0.5
1,624,660 + DVU1548 0.57 -0.1
1,624,699 - DVU1548 0.60 +0.3
1,624,718 + DVU1548 0.62 -0.5

Or see this region's nucleotide sequence