Experiment: MoLS4 with L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1545 and DVU1547 are separated by 466 nucleotides DVU1547 and DVU1548 are separated by 150 nucleotides
DVU1545: DVU1545 - hemolysin-type calcium-binding repeat/calx-beta domain protein (TIGR), at 1,614,477 to 1,621,721
DVU1545
DVU1547: DVU1547 - sensory box protein (TIGR), at 1,622,188 to 1,623,813
DVU1547
DVU1548: DVU1548 - outer membrane transport protein, OmpP1/FadL/TodX family (TIGR), at 1,623,964 to 1,625,178
DVU1548
Position (kb)
1622
1623
1624 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1621.202 kb on - strand at 1621.237 kb on - strand at 1621.272 kb on + strand at 1621.280 kb on - strand at 1621.336 kb on - strand at 1621.338 kb on + strand at 1621.344 kb on + strand at 1621.361 kb on + strand at 1621.544 kb on + strand at 1621.552 kb on - strand at 1621.676 kb on - strand at 1621.686 kb on - strand at 1621.717 kb on + strand at 1621.725 kb on - strand at 1621.727 kb on + strand at 1621.737 kb on - strand at 1621.756 kb on + strand at 1621.764 kb on - strand at 1621.855 kb on + strand at 1621.865 kb on + strand at 1621.868 kb on - strand at 1621.868 kb on - strand at 1621.868 kb on - strand at 1621.868 kb on - strand at 1621.900 kb on - strand at 1622.118 kb on + strand at 1622.135 kb on - strand at 1622.159 kb on - strand at 1622.228 kb on - strand at 1622.276 kb on + strand at 1622.338 kb on + strand at 1622.346 kb on - strand at 1622.400 kb on - strand, within DVU1547 at 1622.483 kb on + strand, within DVU1547 at 1622.506 kb on - strand, within DVU1547 at 1622.542 kb on - strand, within DVU1547 at 1622.561 kb on - strand, within DVU1547 at 1622.613 kb on + strand, within DVU1547 at 1622.614 kb on + strand, within DVU1547 at 1622.622 kb on - strand, within DVU1547 at 1622.639 kb on - strand, within DVU1547 at 1622.639 kb on - strand, within DVU1547 at 1622.679 kb on + strand, within DVU1547 at 1622.687 kb on - strand, within DVU1547 at 1622.747 kb on - strand, within DVU1547 at 1622.800 kb on - strand, within DVU1547 at 1622.902 kb on + strand, within DVU1547 at 1622.943 kb on + strand, within DVU1547 at 1623.038 kb on + strand, within DVU1547 at 1623.075 kb on + strand, within DVU1547 at 1623.113 kb on + strand, within DVU1547 at 1623.129 kb on + strand, within DVU1547 at 1623.237 kb on - strand, within DVU1547 at 1623.237 kb on - strand, within DVU1547 at 1623.267 kb on + strand, within DVU1547 at 1623.381 kb on + strand, within DVU1547 at 1623.403 kb on + strand, within DVU1547 at 1623.403 kb on + strand, within DVU1547 at 1623.466 kb on + strand, within DVU1547 at 1623.474 kb on - strand, within DVU1547 at 1623.476 kb on - strand, within DVU1547 at 1623.535 kb on - strand, within DVU1547 at 1623.563 kb on + strand, within DVU1547 at 1623.619 kb on - strand, within DVU1547 at 1623.619 kb on - strand, within DVU1547 at 1623.626 kb on + strand, within DVU1547 at 1623.626 kb on + strand, within DVU1547 at 1623.635 kb on - strand, within DVU1547 at 1623.659 kb on + strand at 1623.684 kb on - strand at 1623.954 kb on + strand at 1624.033 kb on - strand at 1624.134 kb on + strand, within DVU1548 at 1624.142 kb on - strand, within DVU1548 at 1624.227 kb on + strand, within DVU1548 at 1624.403 kb on + strand, within DVU1548 at 1624.477 kb on + strand, within DVU1548 at 1624.552 kb on - strand, within DVU1548 at 1624.570 kb on + strand, within DVU1548 at 1624.570 kb on + strand, within DVU1548 at 1624.578 kb on - strand, within DVU1548 at 1624.660 kb on + strand, within DVU1548 at 1624.699 kb on - strand, within DVU1548 at 1624.718 kb on + strand, within DVU1548
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N) remove 1,621,202 - -2.2 1,621,237 - -0.3 1,621,272 + -0.4 1,621,280 - +0.4 1,621,336 - -0.0 1,621,338 + -3.0 1,621,344 + +0.0 1,621,361 + +0.3 1,621,544 + -0.4 1,621,552 - +0.2 1,621,676 - +0.3 1,621,686 - -0.5 1,621,717 + -0.1 1,621,725 - -0.9 1,621,727 + +0.1 1,621,737 - -0.7 1,621,756 + -0.6 1,621,764 - -3.3 1,621,855 + -0.7 1,621,865 + -0.3 1,621,868 - -0.4 1,621,868 - +0.6 1,621,868 - +0.4 1,621,868 - +0.2 1,621,900 - +0.2 1,622,118 + -0.4 1,622,135 - -0.4 1,622,159 - -0.4 1,622,228 - -3.1 1,622,276 + +0.0 1,622,338 + -3.9 1,622,346 - -0.6 1,622,400 - DVU1547 0.13 -2.7 1,622,483 + DVU1547 0.18 +0.5 1,622,506 - DVU1547 0.20 -0.9 1,622,542 - DVU1547 0.22 -3.2 1,622,561 - DVU1547 0.23 +0.2 1,622,613 + DVU1547 0.26 +0.0 1,622,614 + DVU1547 0.26 +0.4 1,622,622 - DVU1547 0.27 -0.1 1,622,639 - DVU1547 0.28 -0.5 1,622,639 - DVU1547 0.28 +1.2 1,622,679 + DVU1547 0.30 +0.0 1,622,687 - DVU1547 0.31 -0.8 1,622,747 - DVU1547 0.34 +0.1 1,622,800 - DVU1547 0.38 +0.6 1,622,902 + DVU1547 0.44 -0.4 1,622,943 + DVU1547 0.46 -0.3 1,623,038 + DVU1547 0.52 -0.0 1,623,075 + DVU1547 0.55 -0.3 1,623,113 + DVU1547 0.57 -0.1 1,623,129 + DVU1547 0.58 -0.3 1,623,237 - DVU1547 0.65 -0.3 1,623,237 - DVU1547 0.65 +0.0 1,623,267 + DVU1547 0.66 -3.0 1,623,381 + DVU1547 0.73 -3.7 1,623,403 + DVU1547 0.75 -0.3 1,623,403 + DVU1547 0.75 -3.2 1,623,466 + DVU1547 0.79 +0.1 1,623,474 - DVU1547 0.79 -0.5 1,623,476 - DVU1547 0.79 +0.1 1,623,535 - DVU1547 0.83 -0.4 1,623,563 + DVU1547 0.85 +0.4 1,623,619 - DVU1547 0.88 -0.1 1,623,619 - DVU1547 0.88 +0.2 1,623,626 + DVU1547 0.88 -0.2 1,623,626 + DVU1547 0.88 -0.9 1,623,635 - DVU1547 0.89 -0.7 1,623,659 + +0.1 1,623,684 - +0.1 1,623,954 + +0.1 1,624,033 - -0.2 1,624,134 + DVU1548 0.14 -0.2 1,624,142 - DVU1548 0.15 -0.1 1,624,227 + DVU1548 0.22 -1.5 1,624,403 + DVU1548 0.36 +0.2 1,624,477 + DVU1548 0.42 -0.4 1,624,552 - DVU1548 0.48 +0.2 1,624,570 + DVU1548 0.50 -0.4 1,624,570 + DVU1548 0.50 -0.5 1,624,578 - DVU1548 0.51 -0.5 1,624,660 + DVU1548 0.57 -0.1 1,624,699 - DVU1548 0.60 +0.3 1,624,718 + DVU1548 0.62 -0.5
Or see this region's nucleotide sequence