Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1524

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1523 and DVU1524 are separated by 2 nucleotidesDVU1524 and DVU1525 are separated by 19 nucleotides DVU1523: DVU1523 - hypothetical protein (TIGR), at 1,591,191 to 1,592,219 DVU1523 DVU1524: DVU1524 - conserved hypothetical protein (TIGR), at 1,592,222 to 1,593,118 DVU1524 DVU1525: DVU1525 - conserved domain protein (TIGR), at 1,593,138 to 1,594,130 DVU1525 Position (kb) 1592 1593 1594Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1591.239 kb on - strandat 1591.268 kb on - strandat 1591.293 kb on - strandat 1591.331 kb on + strand, within DVU1523at 1591.339 kb on - strand, within DVU1523at 1591.339 kb on - strand, within DVU1523at 1591.370 kb on + strand, within DVU1523at 1591.370 kb on + strand, within DVU1523at 1591.378 kb on - strand, within DVU1523at 1591.378 kb on - strand, within DVU1523at 1591.378 kb on - strand, within DVU1523at 1591.381 kb on + strand, within DVU1523at 1591.389 kb on - strand, within DVU1523at 1591.549 kb on + strand, within DVU1523at 1591.585 kb on - strand, within DVU1523at 1591.603 kb on - strand, within DVU1523at 1591.743 kb on - strand, within DVU1523at 1591.775 kb on + strand, within DVU1523at 1591.783 kb on - strand, within DVU1523at 1591.813 kb on - strand, within DVU1523at 1591.824 kb on + strand, within DVU1523at 1591.832 kb on - strand, within DVU1523at 1591.866 kb on + strand, within DVU1523at 1591.984 kb on - strand, within DVU1523at 1592.001 kb on - strand, within DVU1523at 1592.001 kb on - strand, within DVU1523at 1592.098 kb on + strand, within DVU1523at 1592.106 kb on - strand, within DVU1523at 1592.213 kb on + strandat 1592.213 kb on + strandat 1592.221 kb on - strandat 1592.221 kb on - strandat 1592.221 kb on - strandat 1592.221 kb on - strandat 1592.221 kb on - strandat 1592.319 kb on + strand, within DVU1524at 1592.398 kb on - strand, within DVU1524at 1592.407 kb on + strand, within DVU1524at 1592.466 kb on - strand, within DVU1524at 1592.558 kb on + strand, within DVU1524at 1592.588 kb on - strand, within DVU1524at 1592.633 kb on - strand, within DVU1524at 1592.650 kb on + strand, within DVU1524at 1592.659 kb on + strand, within DVU1524at 1592.673 kb on - strand, within DVU1524at 1592.729 kb on - strand, within DVU1524at 1592.743 kb on - strand, within DVU1524at 1592.748 kb on - strand, within DVU1524at 1592.748 kb on - strand, within DVU1524at 1592.764 kb on + strand, within DVU1524at 1592.764 kb on + strand, within DVU1524at 1592.807 kb on + strand, within DVU1524at 1592.817 kb on - strand, within DVU1524at 1592.875 kb on + strand, within DVU1524at 1592.973 kb on - strand, within DVU1524at 1592.992 kb on + strand, within DVU1524at 1593.000 kb on - strand, within DVU1524at 1593.039 kb on + strandat 1593.064 kb on + strandat 1593.072 kb on - strandat 1593.072 kb on - strandat 1593.072 kb on - strandat 1593.200 kb on - strandat 1593.395 kb on + strand, within DVU1525at 1593.551 kb on + strand, within DVU1525at 1593.624 kb on + strand, within DVU1525at 1593.624 kb on + strand, within DVU1525at 1593.712 kb on + strand, within DVU1525at 1593.712 kb on - strand, within DVU1525at 1593.725 kb on - strand, within DVU1525at 1593.766 kb on + strand, within DVU1525at 1593.854 kb on + strand, within DVU1525at 1593.905 kb on + strand, within DVU1525at 1593.907 kb on + strand, within DVU1525at 1593.934 kb on - strand, within DVU1525at 1593.945 kb on + strand, within DVU1525at 1593.955 kb on + strand, within DVU1525at 1593.971 kb on + strand, within DVU1525at 1593.972 kb on + strand, within DVU1525at 1593.991 kb on + strand, within DVU1525at 1594.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,591,239 - -0.2
1,591,268 - -0.2
1,591,293 - +0.2
1,591,331 + DVU1523 0.14 +1.8
1,591,339 - DVU1523 0.14 +0.9
1,591,339 - DVU1523 0.14 -0.8
1,591,370 + DVU1523 0.17 +0.3
1,591,370 + DVU1523 0.17 +0.1
1,591,378 - DVU1523 0.18 -0.5
1,591,378 - DVU1523 0.18 +0.6
1,591,378 - DVU1523 0.18 -0.2
1,591,381 + DVU1523 0.18 -3.3
1,591,389 - DVU1523 0.19 +0.4
1,591,549 + DVU1523 0.35 -0.3
1,591,585 - DVU1523 0.38 -0.4
1,591,603 - DVU1523 0.40 +0.1
1,591,743 - DVU1523 0.54 +0.5
1,591,775 + DVU1523 0.57 +1.5
1,591,783 - DVU1523 0.58 -0.5
1,591,813 - DVU1523 0.60 -0.0
1,591,824 + DVU1523 0.62 -0.3
1,591,832 - DVU1523 0.62 -0.5
1,591,866 + DVU1523 0.66 +2.2
1,591,984 - DVU1523 0.77 +0.7
1,592,001 - DVU1523 0.79 -0.4
1,592,001 - DVU1523 0.79 +0.1
1,592,098 + DVU1523 0.88 -2.9
1,592,106 - DVU1523 0.89 -0.4
1,592,213 + -3.4
1,592,213 + -3.2
1,592,221 - +0.0
1,592,221 - -0.1
1,592,221 - -3.4
1,592,221 - -0.2
1,592,221 - -3.1
1,592,319 + DVU1524 0.11 +1.5
1,592,398 - DVU1524 0.20 -0.4
1,592,407 + DVU1524 0.21 -0.3
1,592,466 - DVU1524 0.27 -5.2
1,592,558 + DVU1524 0.37 -0.4
1,592,588 - DVU1524 0.41 -1.8
1,592,633 - DVU1524 0.46 -0.2
1,592,650 + DVU1524 0.48 +0.6
1,592,659 + DVU1524 0.49 -0.4
1,592,673 - DVU1524 0.50 -0.5
1,592,729 - DVU1524 0.57 -0.4
1,592,743 - DVU1524 0.58 -2.7
1,592,748 - DVU1524 0.59 -0.3
1,592,748 - DVU1524 0.59 -0.2
1,592,764 + DVU1524 0.60 +0.1
1,592,764 + DVU1524 0.60 -0.5
1,592,807 + DVU1524 0.65 -1.0
1,592,817 - DVU1524 0.66 +0.3
1,592,875 + DVU1524 0.73 -3.1
1,592,973 - DVU1524 0.84 +0.3
1,592,992 + DVU1524 0.86 +0.7
1,593,000 - DVU1524 0.87 -1.1
1,593,039 + -0.4
1,593,064 + -2.7
1,593,072 - -0.4
1,593,072 - -0.5
1,593,072 - -0.3
1,593,200 - -0.4
1,593,395 + DVU1525 0.26 +0.5
1,593,551 + DVU1525 0.42 -0.2
1,593,624 + DVU1525 0.49 +0.1
1,593,624 + DVU1525 0.49 -4.4
1,593,712 + DVU1525 0.58 -0.1
1,593,712 - DVU1525 0.58 +0.3
1,593,725 - DVU1525 0.59 -1.0
1,593,766 + DVU1525 0.63 -0.7
1,593,854 + DVU1525 0.72 -3.6
1,593,905 + DVU1525 0.77 -2.1
1,593,907 + DVU1525 0.77 -2.8
1,593,934 - DVU1525 0.80 +0.8
1,593,945 + DVU1525 0.81 -0.4
1,593,955 + DVU1525 0.82 -0.2
1,593,971 + DVU1525 0.84 +0.1
1,593,972 + DVU1525 0.84 -0.1
1,593,991 + DVU1525 0.86 -1.0
1,594,055 + -0.1

Or see this region's nucleotide sequence