Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1441

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrnc and flaB1 are separated by 100 nucleotidesflaB1 and DVU1442 are separated by 271 nucleotides DVU1440: rnc - ribonuclease III (TIGR), at 1,516,953 to 1,517,714 rnc DVU1441: flaB1 - flagellin (TIGR), at 1,517,815 to 1,518,711 flaB1 DVU1442: DVU1442 - flagellin FlaG, putative (TIGR), at 1,518,983 to 1,519,357 DVU1442 Position (kb) 1517 1518 1519Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1516.842 kb on + strandat 1516.842 kb on + strandat 1516.842 kb on + strandat 1516.850 kb on - strandat 1516.977 kb on + strandat 1517.880 kb on - strandat 1518.011 kb on - strand, within flaB1at 1518.013 kb on + strand, within flaB1at 1518.013 kb on + strand, within flaB1at 1518.021 kb on - strand, within flaB1at 1518.021 kb on - strand, within flaB1at 1518.196 kb on + strand, within flaB1at 1518.303 kb on + strand, within flaB1at 1518.403 kb on - strand, within flaB1at 1518.533 kb on + strand, within flaB1at 1518.809 kb on - strandat 1518.830 kb on - strandat 1518.907 kb on + strandat 1518.907 kb on + strandat 1518.907 kb on + strandat 1518.907 kb on + strandat 1518.907 kb on + strandat 1518.907 kb on + strandat 1518.907 kb on + strandat 1518.907 kb on + strandat 1518.915 kb on - strandat 1519.002 kb on + strandat 1519.196 kb on + strand, within DVU1442at 1519.214 kb on + strand, within DVU1442at 1519.214 kb on + strand, within DVU1442at 1519.240 kb on - strand, within DVU1442at 1519.268 kb on - strand, within DVU1442at 1519.303 kb on + strand, within DVU1442at 1519.337 kb on + strandat 1519.345 kb on - strandat 1519.345 kb on - strandat 1519.345 kb on - strandat 1519.345 kb on - strandat 1519.467 kb on - strandat 1519.618 kb on - strandat 1519.699 kb on + strandat 1519.701 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,516,842 + +0.1
1,516,842 + -0.8
1,516,842 + -0.3
1,516,850 - -0.4
1,516,977 + +0.6
1,517,880 - +0.1
1,518,011 - flaB1 DVU1441 0.22 -3.0
1,518,013 + flaB1 DVU1441 0.22 -2.5
1,518,013 + flaB1 DVU1441 0.22 -0.0
1,518,021 - flaB1 DVU1441 0.23 -3.1
1,518,021 - flaB1 DVU1441 0.23 +0.3
1,518,196 + flaB1 DVU1441 0.42 -0.5
1,518,303 + flaB1 DVU1441 0.54 -2.5
1,518,403 - flaB1 DVU1441 0.66 -0.1
1,518,533 + flaB1 DVU1441 0.80 -0.3
1,518,809 - -0.3
1,518,830 - -3.4
1,518,907 + -0.1
1,518,907 + +1.3
1,518,907 + -0.3
1,518,907 + -0.1
1,518,907 + +0.4
1,518,907 + +2.2
1,518,907 + -3.7
1,518,907 + -0.3
1,518,915 - -0.4
1,519,002 + -0.3
1,519,196 + DVU1442 0.57 +0.3
1,519,214 + DVU1442 0.62 +0.5
1,519,214 + DVU1442 0.62 +0.2
1,519,240 - DVU1442 0.69 -3.6
1,519,268 - DVU1442 0.76 -3.1
1,519,303 + DVU1442 0.85 -0.7
1,519,337 + +0.1
1,519,345 - -0.2
1,519,345 - -0.0
1,519,345 - +0.0
1,519,345 - -0.5
1,519,467 - -0.4
1,519,618 - -2.7
1,519,699 + -0.1
1,519,701 + -2.2

Or see this region's nucleotide sequence