Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1009

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1008 and DVU1009 are separated by 343 nucleotidesDVU1009 and DVU1012 are separated by 739 nucleotides DVU1008: DVU1008 - hypothetical protein (TIGR), at 1,103,500 to 1,104,303 DVU1008 DVU1009: DVU1009 - hypothetical protein (TIGR), at 1,104,647 to 1,105,261 DVU1009 DVU1012: DVU1012 - hemolysin-type calcium-binding repeat protein (TIGR), at 1,106,001 to 1,115,117 DVU1012 Position (kb) 1104 1105 1106Strain fitness (log2 ratio) -3 -2 -1 0 1at 1103.687 kb on + strand, within DVU1008at 1103.733 kb on - strand, within DVU1008at 1103.836 kb on - strand, within DVU1008at 1103.853 kb on + strand, within DVU1008at 1103.858 kb on + strand, within DVU1008at 1103.871 kb on - strand, within DVU1008at 1103.876 kb on - strand, within DVU1008at 1103.916 kb on - strand, within DVU1008at 1103.940 kb on + strand, within DVU1008at 1104.066 kb on + strand, within DVU1008at 1104.154 kb on + strand, within DVU1008at 1104.185 kb on - strand, within DVU1008at 1104.393 kb on + strandat 1104.433 kb on + strandat 1104.602 kb on - strandat 1104.604 kb on - strandat 1104.653 kb on - strandat 1104.839 kb on + strand, within DVU1009at 1104.865 kb on + strand, within DVU1009at 1105.032 kb on - strand, within DVU1009at 1105.052 kb on - strand, within DVU1009at 1105.629 kb on - strandat 1105.636 kb on + strandat 1105.715 kb on + strandat 1105.743 kb on - strandat 1105.769 kb on - strandat 1105.959 kb on + strandat 1106.035 kb on - strandat 1106.096 kb on - strandat 1106.173 kb on + strandat 1106.222 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,103,687 + DVU1008 0.23 +0.0
1,103,733 - DVU1008 0.29 -0.5
1,103,836 - DVU1008 0.42 -0.0
1,103,853 + DVU1008 0.44 -0.3
1,103,858 + DVU1008 0.45 -0.3
1,103,871 - DVU1008 0.46 -2.9
1,103,876 - DVU1008 0.47 -0.2
1,103,916 - DVU1008 0.52 +1.3
1,103,940 + DVU1008 0.55 +0.0
1,104,066 + DVU1008 0.70 -0.1
1,104,154 + DVU1008 0.81 -0.7
1,104,185 - DVU1008 0.85 +0.0
1,104,393 + -0.1
1,104,433 + -0.1
1,104,602 - -0.9
1,104,604 - -3.3
1,104,653 - -0.9
1,104,839 + DVU1009 0.31 -0.0
1,104,865 + DVU1009 0.35 -0.6
1,105,032 - DVU1009 0.63 -2.3
1,105,052 - DVU1009 0.66 -2.2
1,105,629 - -0.3
1,105,636 + +0.3
1,105,715 + +0.7
1,105,743 - -0.4
1,105,769 - +0.3
1,105,959 + +0.2
1,106,035 - -0.0
1,106,096 - +0.2
1,106,173 + +0.1
1,106,222 + +0.3

Or see this region's nucleotide sequence