Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0938

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0936 and DVU0937 are separated by 13 nucleotidesDVU0937 and DVU0938 are separated by 63 nucleotidesDVU0938 and DVU0939 are separated by 399 nucleotides DVU0936: DVU0936 - hypothetical protein (TIGR), at 1,028,158 to 1,028,445 DVU0936 DVU0937: DVU0937 - hypothetical protein (TIGR), at 1,028,459 to 1,028,845 DVU0937 DVU0938: DVU0938 - isoamylase N-terminal domain protein (TIGR), at 1,028,909 to 1,029,277 DVU0938 DVU0939: DVU0939 - conserved hypothetical protein (TIGR), at 1,029,677 to 1,030,426 DVU0939 Position (kb) 1028 1029 1030Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1028.013 kb on + strandat 1028.021 kb on - strandat 1028.029 kb on + strandat 1028.150 kb on - strandat 1028.153 kb on + strandat 1028.189 kb on - strand, within DVU0936at 1028.241 kb on - strand, within DVU0936at 1028.302 kb on - strand, within DVU0936at 1028.312 kb on - strand, within DVU0936at 1028.312 kb on - strand, within DVU0936at 1028.314 kb on + strand, within DVU0936at 1028.314 kb on + strand, within DVU0936at 1028.314 kb on + strand, within DVU0936at 1028.484 kb on - strandat 1028.516 kb on + strand, within DVU0937at 1028.660 kb on + strand, within DVU0937at 1028.747 kb on - strand, within DVU0937at 1028.997 kb on - strand, within DVU0938at 1029.049 kb on + strand, within DVU0938at 1029.097 kb on + strand, within DVU0938at 1029.157 kb on - strand, within DVU0938at 1029.412 kb on + strandat 1029.449 kb on - strandat 1029.511 kb on + strandat 1029.529 kb on - strandat 1029.558 kb on - strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.636 kb on - strandat 1029.696 kb on + strandat 1029.696 kb on + strandat 1029.704 kb on - strandat 1029.704 kb on - strandat 1029.717 kb on - strandat 1029.724 kb on - strandat 1029.760 kb on + strand, within DVU0939at 1029.788 kb on + strand, within DVU0939at 1029.820 kb on - strand, within DVU0939at 1029.892 kb on + strand, within DVU0939at 1029.917 kb on + strand, within DVU0939at 1029.917 kb on + strand, within DVU0939at 1029.989 kb on + strand, within DVU0939at 1029.989 kb on + strand, within DVU0939at 1030.027 kb on + strand, within DVU0939at 1030.079 kb on + strand, within DVU0939at 1030.120 kb on - strand, within DVU0939

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,028,013 + -2.4
1,028,021 - +0.0
1,028,029 + -1.3
1,028,150 - -2.9
1,028,153 + -0.9
1,028,189 - DVU0936 0.11 -2.7
1,028,241 - DVU0936 0.29 +0.1
1,028,302 - DVU0936 0.50 -0.3
1,028,312 - DVU0936 0.53 -0.0
1,028,312 - DVU0936 0.53 +0.1
1,028,314 + DVU0936 0.54 +0.5
1,028,314 + DVU0936 0.54 -0.0
1,028,314 + DVU0936 0.54 -0.5
1,028,484 - -0.0
1,028,516 + DVU0937 0.15 +0.0
1,028,660 + DVU0937 0.52 -0.1
1,028,747 - DVU0937 0.74 -4.0
1,028,997 - DVU0938 0.24 +3.0
1,029,049 + DVU0938 0.38 -3.4
1,029,097 + DVU0938 0.51 -3.0
1,029,157 - DVU0938 0.67 -0.2
1,029,412 + -0.5
1,029,449 - +0.5
1,029,511 + +0.8
1,029,529 - -0.1
1,029,558 - -3.1
1,029,626 + -0.2
1,029,626 + -0.5
1,029,626 + +0.7
1,029,626 + -0.4
1,029,626 + -0.1
1,029,626 + -0.7
1,029,626 + -0.0
1,029,634 - -0.1
1,029,634 - +0.1
1,029,634 - +0.3
1,029,634 - +0.4
1,029,634 - -2.0
1,029,634 - -1.3
1,029,634 - +0.2
1,029,634 - +0.3
1,029,636 - +1.4
1,029,696 + +0.2
1,029,696 + -0.1
1,029,704 - +0.1
1,029,704 - +0.2
1,029,717 - +0.3
1,029,724 - -0.4
1,029,760 + DVU0939 0.11 +1.0
1,029,788 + DVU0939 0.15 -0.4
1,029,820 - DVU0939 0.19 -2.7
1,029,892 + DVU0939 0.29 -1.0
1,029,917 + DVU0939 0.32 -0.6
1,029,917 + DVU0939 0.32 -0.0
1,029,989 + DVU0939 0.42 +0.2
1,029,989 + DVU0939 0.42 -0.7
1,030,027 + DVU0939 0.47 -0.3
1,030,079 + DVU0939 0.54 +0.2
1,030,120 - DVU0939 0.59 +0.4

Or see this region's nucleotide sequence