Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0735

Experiment: MoLS4 with L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntcysG-1 and DVU0735 are separated by 707 nucleotidesDVU0735 and purN are separated by 26 nucleotidespurN and DVU0737 are separated by 252 nucleotides DVU0734: cysG-1 - uroporphyrinogen III synthase/methyltransferase (TIGR), at 819,967 to 821,478 cysG-1 DVU0735: DVU0735 - MOSC domain protein (TIGR), at 822,186 to 822,620 DVU0735 DVU0736: purN - phosphoribosylglycinamide formyltransferase (TIGR), at 822,647 to 823,324 purN DVU0737: DVU0737 - sensory box histidine kinase (TIGR), at 823,577 to 825,817 DVU0737 Position (kb) 822 823Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 821.591 kb on + strandat 821.630 kb on + strandat 821.833 kb on - strandat 822.101 kb on - strandat 822.123 kb on + strandat 822.189 kb on + strandat 822.194 kb on + strandat 822.194 kb on + strandat 822.194 kb on + strandat 822.194 kb on + strandat 822.202 kb on - strandat 822.202 kb on - strandat 822.218 kb on + strandat 822.250 kb on + strand, within DVU0735at 822.250 kb on + strand, within DVU0735at 822.258 kb on - strand, within DVU0735at 822.258 kb on - strand, within DVU0735at 822.258 kb on - strand, within DVU0735at 822.567 kb on + strand, within DVU0735at 822.603 kb on - strandat 822.614 kb on + strandat 822.624 kb on + strandat 822.689 kb on - strandat 822.773 kb on + strand, within purNat 822.870 kb on - strand, within purNat 822.889 kb on + strand, within purNat 822.900 kb on - strand, within purNat 822.900 kb on - strand, within purNat 822.902 kb on - strand, within purNat 823.027 kb on - strand, within purNat 823.032 kb on - strand, within purNat 823.055 kb on - strand, within purNat 823.149 kb on - strand, within purNat 823.218 kb on + strand, within purNat 823.260 kb on - strandat 823.376 kb on + strandat 823.385 kb on + strandat 823.392 kb on - strandat 823.450 kb on - strandat 823.450 kb on - strandat 823.485 kb on - strandat 823.495 kb on + strandat 823.509 kb on - strandat 823.525 kb on + strandat 823.555 kb on + strandat 823.563 kb on - strandat 823.563 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
remove
821,591 + -0.4
821,630 + -0.2
821,833 - +0.2
822,101 - -0.3
822,123 + -3.4
822,189 + -0.6
822,194 + +0.2
822,194 + +1.5
822,194 + -0.7
822,194 + -0.4
822,202 - -0.1
822,202 - +0.3
822,218 + -0.2
822,250 + DVU0735 0.15 -0.8
822,250 + DVU0735 0.15 +0.2
822,258 - DVU0735 0.17 -3.2
822,258 - DVU0735 0.17 -0.5
822,258 - DVU0735 0.17 +0.2
822,567 + DVU0735 0.88 -0.5
822,603 - +0.7
822,614 + +0.2
822,624 + +0.1
822,689 - +2.2
822,773 + purN DVU0736 0.19 +0.4
822,870 - purN DVU0736 0.33 -3.1
822,889 + purN DVU0736 0.36 -3.4
822,900 - purN DVU0736 0.37 -0.2
822,900 - purN DVU0736 0.37 +0.1
822,902 - purN DVU0736 0.38 +0.4
823,027 - purN DVU0736 0.56 +2.2
823,032 - purN DVU0736 0.57 -0.2
823,055 - purN DVU0736 0.60 -0.3
823,149 - purN DVU0736 0.74 -0.1
823,218 + purN DVU0736 0.84 -0.1
823,260 - -0.3
823,376 + -0.2
823,385 + -0.2
823,392 - +1.6
823,450 - +0.2
823,450 - +0.5
823,485 - +0.3
823,495 + -0.4
823,509 - -2.9
823,525 + +0.9
823,555 + -0.7
823,563 - +0.1
823,563 - -0.0

Or see this region's nucleotide sequence