Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3761

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3760 and Rru_A3761 are separated by 136 nucleotidesRru_A3761 and Rru_A3762 are separated by 135 nucleotidesRru_A3762 and Rru_A3763 overlap by 4 nucleotides Rru_A3760: Rru_A3760 - regulatory protein GntR (NCBI), at 4,310,337 to 4,311,725 _A3760 Rru_A3761: Rru_A3761 - hypothetical protein (NCBI), at 4,311,862 to 4,313,154 _A3761 Rru_A3762: Rru_A3762 - Peptidase M15D, vanX D-ala-D-ala dipeptidase (NCBI), at 4,313,290 to 4,313,862 _A3762 Rru_A3763: Rru_A3763 - Peptidase M22, glycoprotease (NCBI), at 4,313,859 to 4,314,557 _A3763 Position (kb) 4311 4312 4313 4314Strain fitness (log2 ratio) -3 -2 -1 0 1at 4310.931 kb on + strand, within Rru_A3760at 4310.932 kb on - strand, within Rru_A3760at 4310.932 kb on - strand, within Rru_A3760at 4310.932 kb on - strand, within Rru_A3760at 4310.932 kb on - strand, within Rru_A3760at 4311.057 kb on + strand, within Rru_A3760at 4311.057 kb on + strand, within Rru_A3760at 4311.057 kb on + strand, within Rru_A3760at 4311.058 kb on - strand, within Rru_A3760at 4311.171 kb on + strand, within Rru_A3760at 4311.171 kb on + strand, within Rru_A3760at 4311.171 kb on + strand, within Rru_A3760at 4311.171 kb on + strand, within Rru_A3760at 4311.172 kb on - strand, within Rru_A3760at 4311.172 kb on - strand, within Rru_A3760at 4311.172 kb on - strand, within Rru_A3760at 4311.172 kb on - strand, within Rru_A3760at 4311.172 kb on - strand, within Rru_A3760at 4311.207 kb on + strand, within Rru_A3760at 4311.208 kb on - strand, within Rru_A3760at 4311.208 kb on - strand, within Rru_A3760at 4311.235 kb on - strand, within Rru_A3760at 4311.242 kb on + strand, within Rru_A3760at 4311.243 kb on - strand, within Rru_A3760at 4311.243 kb on - strand, within Rru_A3760at 4311.869 kb on + strandat 4311.870 kb on - strandat 4311.870 kb on - strandat 4312.063 kb on + strand, within Rru_A3761at 4312.063 kb on + strand, within Rru_A3761at 4312.111 kb on + strand, within Rru_A3761at 4312.112 kb on - strand, within Rru_A3761at 4312.112 kb on - strand, within Rru_A3761at 4312.176 kb on - strand, within Rru_A3761at 4312.176 kb on - strand, within Rru_A3761at 4312.176 kb on - strand, within Rru_A3761at 4312.384 kb on + strand, within Rru_A3761at 4312.384 kb on + strand, within Rru_A3761at 4312.385 kb on - strand, within Rru_A3761at 4312.387 kb on + strand, within Rru_A3761at 4312.387 kb on + strand, within Rru_A3761at 4312.388 kb on - strand, within Rru_A3761at 4312.388 kb on - strand, within Rru_A3761at 4312.388 kb on - strand, within Rru_A3761at 4312.390 kb on + strand, within Rru_A3761at 4312.390 kb on + strand, within Rru_A3761at 4312.390 kb on + strand, within Rru_A3761at 4312.390 kb on + strand, within Rru_A3761at 4312.391 kb on - strand, within Rru_A3761at 4312.391 kb on - strand, within Rru_A3761at 4312.391 kb on - strand, within Rru_A3761at 4312.391 kb on - strand, within Rru_A3761at 4312.391 kb on - strand, within Rru_A3761at 4312.391 kb on - strand, within Rru_A3761at 4312.609 kb on + strand, within Rru_A3761at 4312.610 kb on - strand, within Rru_A3761at 4312.651 kb on + strand, within Rru_A3761at 4312.651 kb on + strand, within Rru_A3761at 4312.651 kb on + strand, within Rru_A3761at 4312.652 kb on - strand, within Rru_A3761at 4312.652 kb on - strand, within Rru_A3761at 4312.652 kb on - strand, within Rru_A3761at 4312.652 kb on - strand, within Rru_A3761at 4312.652 kb on - strand, within Rru_A3761at 4312.652 kb on - strand, within Rru_A3761at 4312.652 kb on - strand, within Rru_A3761at 4312.782 kb on + strand, within Rru_A3761at 4312.782 kb on + strand, within Rru_A3761at 4312.783 kb on - strand, within Rru_A3761at 4312.793 kb on - strand, within Rru_A3761at 4312.793 kb on - strand, within Rru_A3761at 4312.799 kb on + strand, within Rru_A3761at 4312.799 kb on + strand, within Rru_A3761at 4312.799 kb on + strand, within Rru_A3761at 4312.799 kb on + strand, within Rru_A3761at 4312.799 kb on + strand, within Rru_A3761at 4312.799 kb on + strand, within Rru_A3761at 4312.800 kb on - strand, within Rru_A3761at 4312.800 kb on - strand, within Rru_A3761at 4312.800 kb on - strand, within Rru_A3761at 4313.341 kb on + strandat 4313.395 kb on + strand, within Rru_A3762at 4313.568 kb on + strand, within Rru_A3762at 4313.568 kb on + strand, within Rru_A3762at 4313.568 kb on + strand, within Rru_A3762at 4313.597 kb on + strand, within Rru_A3762at 4313.749 kb on + strand, within Rru_A3762

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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4,310,931 + Rru_A3760 0.43 +0.1
4,310,932 - Rru_A3760 0.43 +0.1
4,310,932 - Rru_A3760 0.43 -0.9
4,310,932 - Rru_A3760 0.43 -1.0
4,310,932 - Rru_A3760 0.43 +0.1
4,311,057 + Rru_A3760 0.52 +0.1
4,311,057 + Rru_A3760 0.52 +0.1
4,311,057 + Rru_A3760 0.52 -1.0
4,311,058 - Rru_A3760 0.52 +0.1
4,311,171 + Rru_A3760 0.60 +0.1
4,311,171 + Rru_A3760 0.60 -0.8
4,311,171 + Rru_A3760 0.60 +0.1
4,311,171 + Rru_A3760 0.60 -0.9
4,311,172 - Rru_A3760 0.60 -1.3
4,311,172 - Rru_A3760 0.60 +0.1
4,311,172 - Rru_A3760 0.60 +0.1
4,311,172 - Rru_A3760 0.60 -0.9
4,311,172 - Rru_A3760 0.60 -1.0
4,311,207 + Rru_A3760 0.63 -0.9
4,311,208 - Rru_A3760 0.63 +0.1
4,311,208 - Rru_A3760 0.63 +0.1
4,311,235 - Rru_A3760 0.65 +0.1
4,311,242 + Rru_A3760 0.65 +0.1
4,311,243 - Rru_A3760 0.65 +0.1
4,311,243 - Rru_A3760 0.65 -1.5
4,311,869 + +0.1
4,311,870 - +0.1
4,311,870 - +0.1
4,312,063 + Rru_A3761 0.16 -3.0
4,312,063 + Rru_A3761 0.16 +0.1
4,312,111 + Rru_A3761 0.19 +0.1
4,312,112 - Rru_A3761 0.19 +0.1
4,312,112 - Rru_A3761 0.19 +0.1
4,312,176 - Rru_A3761 0.24 +0.7
4,312,176 - Rru_A3761 0.24 -0.8
4,312,176 - Rru_A3761 0.24 +0.1
4,312,384 + Rru_A3761 0.40 +0.1
4,312,384 + Rru_A3761 0.40 +0.1
4,312,385 - Rru_A3761 0.40 +0.1
4,312,387 + Rru_A3761 0.41 +0.1
4,312,387 + Rru_A3761 0.41 -0.9
4,312,388 - Rru_A3761 0.41 +0.1
4,312,388 - Rru_A3761 0.41 +0.1
4,312,388 - Rru_A3761 0.41 -0.9
4,312,390 + Rru_A3761 0.41 +0.1
4,312,390 + Rru_A3761 0.41 +0.1
4,312,390 + Rru_A3761 0.41 +0.1
4,312,390 + Rru_A3761 0.41 -1.5
4,312,391 - Rru_A3761 0.41 +0.1
4,312,391 - Rru_A3761 0.41 +0.1
4,312,391 - Rru_A3761 0.41 -0.8
4,312,391 - Rru_A3761 0.41 -0.1
4,312,391 - Rru_A3761 0.41 -0.9
4,312,391 - Rru_A3761 0.41 -0.9
4,312,609 + Rru_A3761 0.58 +0.1
4,312,610 - Rru_A3761 0.58 -1.0
4,312,651 + Rru_A3761 0.61 -0.9
4,312,651 + Rru_A3761 0.61 -1.0
4,312,651 + Rru_A3761 0.61 +0.1
4,312,652 - Rru_A3761 0.61 +0.1
4,312,652 - Rru_A3761 0.61 -0.7
4,312,652 - Rru_A3761 0.61 +0.1
4,312,652 - Rru_A3761 0.61 +0.1
4,312,652 - Rru_A3761 0.61 +0.1
4,312,652 - Rru_A3761 0.61 +0.1
4,312,652 - Rru_A3761 0.61 +0.1
4,312,782 + Rru_A3761 0.71 -0.8
4,312,782 + Rru_A3761 0.71 -0.8
4,312,783 - Rru_A3761 0.71 +0.1
4,312,793 - Rru_A3761 0.72 +0.1
4,312,793 - Rru_A3761 0.72 -1.2
4,312,799 + Rru_A3761 0.72 +0.1
4,312,799 + Rru_A3761 0.72 +0.1
4,312,799 + Rru_A3761 0.72 +0.1
4,312,799 + Rru_A3761 0.72 +0.1
4,312,799 + Rru_A3761 0.72 -0.1
4,312,799 + Rru_A3761 0.72 +0.1
4,312,800 - Rru_A3761 0.73 -0.9
4,312,800 - Rru_A3761 0.73 +0.1
4,312,800 - Rru_A3761 0.73 +0.1
4,313,341 + +0.1
4,313,395 + Rru_A3762 0.18 +0.1
4,313,568 + Rru_A3762 0.49 -0.9
4,313,568 + Rru_A3762 0.49 +0.1
4,313,568 + Rru_A3762 0.49 -1.9
4,313,597 + Rru_A3762 0.54 +0.1
4,313,749 + Rru_A3762 0.80 +0.1

Or see this region's nucleotide sequence