Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3705 and Rru_A3706 are separated by 23 nucleotides Rru_A3706 and Rru_A3707 are separated by 84 nucleotides
Rru_A3705: Rru_A3705 - Cell divisionFtsK/SpoIIIE (NCBI), at 4,253,397 to 4,255,946
_A3705
Rru_A3706: Rru_A3706 - Aminotransferase, class I and II (NCBI), at 4,255,970 to 4,257,352
_A3706
Rru_A3707: Rru_A3707 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 (NCBI), at 4,257,437 to 4,258,726
_A3707
Position (kb)
4255
4256
4257
4258 Strain fitness (log2 ratio)
-1
0
1 at 4256.092 kb on + strand at 4256.092 kb on + strand at 4256.092 kb on + strand at 4256.093 kb on - strand at 4256.093 kb on - strand at 4256.094 kb on + strand at 4256.094 kb on + strand at 4256.094 kb on + strand at 4256.094 kb on + strand at 4256.094 kb on + strand at 4256.095 kb on - strand at 4256.095 kb on - strand at 4256.530 kb on - strand, within Rru_A3706 at 4256.530 kb on - strand, within Rru_A3706 at 4256.530 kb on - strand, within Rru_A3706 at 4256.542 kb on - strand, within Rru_A3706 at 4256.542 kb on - strand, within Rru_A3706 at 4256.542 kb on - strand, within Rru_A3706 at 4256.776 kb on - strand, within Rru_A3706 at 4256.785 kb on - strand, within Rru_A3706 at 4256.785 kb on - strand, within Rru_A3706 at 4256.863 kb on - strand, within Rru_A3706 at 4256.863 kb on - strand, within Rru_A3706 at 4256.863 kb on - strand, within Rru_A3706 at 4256.863 kb on - strand, within Rru_A3706 at 4256.863 kb on - strand, within Rru_A3706 at 4256.863 kb on - strand, within Rru_A3706 at 4257.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 4,256,092 + -0.5 4,256,092 + +0.1 4,256,092 + +0.1 4,256,093 - +0.1 4,256,093 - +0.1 4,256,094 + +0.1 4,256,094 + +0.1 4,256,094 + +0.1 4,256,094 + +0.1 4,256,094 + +0.1 4,256,095 - -0.9 4,256,095 - +0.1 4,256,530 - Rru_A3706 0.40 +0.1 4,256,530 - Rru_A3706 0.40 +0.4 4,256,530 - Rru_A3706 0.40 +0.1 4,256,542 - Rru_A3706 0.41 +0.1 4,256,542 - Rru_A3706 0.41 +0.1 4,256,542 - Rru_A3706 0.41 +0.1 4,256,776 - Rru_A3706 0.58 +0.1 4,256,785 - Rru_A3706 0.59 -0.2 4,256,785 - Rru_A3706 0.59 +0.1 4,256,863 - Rru_A3706 0.65 +0.1 4,256,863 - Rru_A3706 0.65 +0.1 4,256,863 - Rru_A3706 0.65 -0.9 4,256,863 - Rru_A3706 0.65 +0.1 4,256,863 - Rru_A3706 0.65 +0.1 4,256,863 - Rru_A3706 0.65 +0.1 4,257,252 - +0.1
Or see this region's nucleotide sequence