Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3470

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3468 and Rru_A3469 are separated by 118 nucleotidesRru_A3469 and Rru_A3470 are separated by 137 nucleotidesRru_A3470 and Rru_A3471 are separated by 87 nucleotidesRru_A3471 and Rru_A3472 are separated by 28 nucleotides Rru_A3468: Rru_A3468 - Transcriptional Regulator, AsnC family (NCBI), at 3,993,521 to 3,993,946 _A3468 Rru_A3469: Rru_A3469 - hypothetical protein (NCBI), at 3,994,065 to 3,994,775 _A3469 Rru_A3470: Rru_A3470 - hypothetical protein (NCBI), at 3,994,913 to 3,995,530 _A3470 Rru_A3471: Rru_A3471 - RecR protein (NCBI), at 3,995,618 to 3,996,211 _A3471 Rru_A3472: Rru_A3472 - hypothetical protein (NCBI), at 3,996,240 to 3,996,563 _A3472 Position (kb) 3994 3995 3996Strain fitness (log2 ratio) -1 0 1at 3993.945 kb on - strandat 3993.995 kb on + strandat 3994.059 kb on - strandat 3994.059 kb on - strandat 3994.300 kb on - strand, within Rru_A3469at 3994.300 kb on - strand, within Rru_A3469at 3994.342 kb on + strand, within Rru_A3469at 3994.342 kb on + strand, within Rru_A3469at 3994.342 kb on + strand, within Rru_A3469at 3994.343 kb on - strand, within Rru_A3469at 3994.343 kb on - strand, within Rru_A3469at 3994.409 kb on - strand, within Rru_A3469at 3994.465 kb on + strand, within Rru_A3469at 3994.465 kb on + strand, within Rru_A3469at 3994.465 kb on + strand, within Rru_A3469at 3994.465 kb on + strand, within Rru_A3469at 3994.465 kb on + strand, within Rru_A3469at 3994.465 kb on + strand, within Rru_A3469at 3994.465 kb on + strand, within Rru_A3469at 3994.465 kb on + strand, within Rru_A3469at 3994.465 kb on + strand, within Rru_A3469at 3994.465 kb on + strand, within Rru_A3469at 3994.466 kb on - strand, within Rru_A3469at 3994.466 kb on - strand, within Rru_A3469at 3994.466 kb on - strand, within Rru_A3469at 3994.466 kb on - strand, within Rru_A3469at 3994.634 kb on + strand, within Rru_A3469at 3994.635 kb on - strand, within Rru_A3469at 3994.635 kb on - strand, within Rru_A3469at 3994.636 kb on + strand, within Rru_A3469at 3994.636 kb on + strand, within Rru_A3469at 3994.636 kb on + strand, within Rru_A3469at 3994.637 kb on - strand, within Rru_A3469at 3994.652 kb on + strand, within Rru_A3469at 3994.654 kb on + strand, within Rru_A3469at 3994.654 kb on + strand, within Rru_A3469at 3994.735 kb on - strandat 3994.769 kb on + strandat 3995.046 kb on + strand, within Rru_A3470at 3995.046 kb on + strand, within Rru_A3470at 3995.181 kb on + strand, within Rru_A3470at 3995.181 kb on + strand, within Rru_A3470at 3995.182 kb on - strand, within Rru_A3470at 3995.182 kb on - strand, within Rru_A3470at 3995.214 kb on + strand, within Rru_A3470at 3995.215 kb on - strand, within Rru_A3470at 3995.375 kb on - strand, within Rru_A3470at 3995.671 kb on - strandat 3995.721 kb on - strand, within Rru_A3471at 3995.904 kb on + strand, within Rru_A3471

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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3,993,945 - -0.3
3,993,995 + -1.5
3,994,059 - +0.1
3,994,059 - +0.1
3,994,300 - Rru_A3469 0.33 +0.1
3,994,300 - Rru_A3469 0.33 +0.1
3,994,342 + Rru_A3469 0.39 +0.1
3,994,342 + Rru_A3469 0.39 +0.1
3,994,342 + Rru_A3469 0.39 +0.1
3,994,343 - Rru_A3469 0.39 +0.1
3,994,343 - Rru_A3469 0.39 +0.1
3,994,409 - Rru_A3469 0.48 +0.1
3,994,465 + Rru_A3469 0.56 +0.1
3,994,465 + Rru_A3469 0.56 +0.1
3,994,465 + Rru_A3469 0.56 +0.1
3,994,465 + Rru_A3469 0.56 +0.1
3,994,465 + Rru_A3469 0.56 -0.2
3,994,465 + Rru_A3469 0.56 -0.5
3,994,465 + Rru_A3469 0.56 +0.1
3,994,465 + Rru_A3469 0.56 -0.9
3,994,465 + Rru_A3469 0.56 +0.1
3,994,465 + Rru_A3469 0.56 +0.1
3,994,466 - Rru_A3469 0.56 +0.1
3,994,466 - Rru_A3469 0.56 +0.1
3,994,466 - Rru_A3469 0.56 +0.1
3,994,466 - Rru_A3469 0.56 +0.1
3,994,634 + Rru_A3469 0.80 +1.0
3,994,635 - Rru_A3469 0.80 +0.7
3,994,635 - Rru_A3469 0.80 +0.1
3,994,636 + Rru_A3469 0.80 +0.1
3,994,636 + Rru_A3469 0.80 +0.1
3,994,636 + Rru_A3469 0.80 +0.1
3,994,637 - Rru_A3469 0.80 -0.4
3,994,652 + Rru_A3469 0.83 +0.1
3,994,654 + Rru_A3469 0.83 +0.1
3,994,654 + Rru_A3469 0.83 +0.1
3,994,735 - -0.2
3,994,769 + -0.9
3,995,046 + Rru_A3470 0.22 -0.7
3,995,046 + Rru_A3470 0.22 +0.1
3,995,181 + Rru_A3470 0.43 -0.7
3,995,181 + Rru_A3470 0.43 +0.1
3,995,182 - Rru_A3470 0.44 +0.1
3,995,182 - Rru_A3470 0.44 +0.1
3,995,214 + Rru_A3470 0.49 +0.1
3,995,215 - Rru_A3470 0.49 +0.1
3,995,375 - Rru_A3470 0.75 -0.1
3,995,671 - +0.1
3,995,721 - Rru_A3471 0.17 +0.1
3,995,904 + Rru_A3471 0.48 +0.1

Or see this region's nucleotide sequence