Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3013

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3011 and Rru_A3012 are separated by 24 nucleotidesRru_A3012 and Rru_A3013 are separated by 11 nucleotidesRru_A3013 and Rru_A3014 are separated by 5 nucleotides Rru_A3011: Rru_A3011 - Isochorismatase hydrolase (NCBI), at 3,468,426 to 3,469,133 _A3011 Rru_A3012: Rru_A3012 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 3,469,158 to 3,469,961 _A3012 Rru_A3013: Rru_A3013 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 3,469,973 to 3,470,839 _A3013 Rru_A3014: Rru_A3014 - ABC transporter component (NCBI), at 3,470,845 to 3,471,939 _A3014 Position (kb) 3469 3470 3471Strain fitness (log2 ratio) -2 -1 0 1at 3469.086 kb on + strandat 3469.086 kb on + strandat 3469.087 kb on - strandat 3469.087 kb on - strandat 3469.122 kb on + strandat 3469.123 kb on - strandat 3469.262 kb on + strand, within Rru_A3012at 3469.262 kb on + strand, within Rru_A3012at 3469.263 kb on - strand, within Rru_A3012at 3469.263 kb on - strand, within Rru_A3012at 3469.263 kb on - strand, within Rru_A3012at 3469.283 kb on + strand, within Rru_A3012at 3469.285 kb on + strand, within Rru_A3012at 3469.286 kb on - strand, within Rru_A3012at 3469.286 kb on - strand, within Rru_A3012at 3469.286 kb on - strand, within Rru_A3012at 3469.286 kb on - strand, within Rru_A3012at 3469.322 kb on + strand, within Rru_A3012at 3469.324 kb on + strand, within Rru_A3012at 3469.483 kb on + strand, within Rru_A3012at 3469.483 kb on + strand, within Rru_A3012at 3469.483 kb on + strand, within Rru_A3012at 3469.483 kb on + strand, within Rru_A3012at 3469.484 kb on - strand, within Rru_A3012at 3469.484 kb on - strand, within Rru_A3012at 3469.551 kb on - strand, within Rru_A3012at 3469.551 kb on - strand, within Rru_A3012at 3469.551 kb on - strand, within Rru_A3012at 3469.675 kb on + strand, within Rru_A3012at 3469.754 kb on + strand, within Rru_A3012at 3469.754 kb on + strand, within Rru_A3012at 3469.754 kb on + strand, within Rru_A3012at 3469.755 kb on - strand, within Rru_A3012at 3469.755 kb on - strand, within Rru_A3012at 3469.837 kb on + strand, within Rru_A3012at 3469.885 kb on + strandat 3469.886 kb on - strandat 3469.886 kb on - strandat 3469.886 kb on - strandat 3469.886 kb on - strandat 3469.886 kb on - strandat 3469.955 kb on + strandat 3469.955 kb on + strandat 3469.956 kb on - strandat 3470.091 kb on + strand, within Rru_A3013at 3470.092 kb on - strand, within Rru_A3013at 3470.346 kb on + strand, within Rru_A3013at 3470.346 kb on + strand, within Rru_A3013at 3470.346 kb on + strand, within Rru_A3013at 3470.347 kb on - strand, within Rru_A3013at 3470.347 kb on - strand, within Rru_A3013at 3470.347 kb on - strand, within Rru_A3013at 3470.352 kb on + strand, within Rru_A3013at 3470.352 kb on + strand, within Rru_A3013at 3470.352 kb on + strand, within Rru_A3013at 3470.352 kb on + strand, within Rru_A3013at 3470.352 kb on + strand, within Rru_A3013at 3470.352 kb on + strand, within Rru_A3013at 3470.352 kb on + strand, within Rru_A3013at 3470.352 kb on + strand, within Rru_A3013at 3470.352 kb on + strand, within Rru_A3013at 3470.353 kb on - strand, within Rru_A3013at 3470.353 kb on - strand, within Rru_A3013at 3470.353 kb on - strand, within Rru_A3013at 3470.353 kb on - strand, within Rru_A3013at 3470.353 kb on - strand, within Rru_A3013at 3470.353 kb on - strand, within Rru_A3013at 3470.353 kb on - strand, within Rru_A3013at 3470.385 kb on + strand, within Rru_A3013at 3470.385 kb on + strand, within Rru_A3013at 3470.386 kb on - strand, within Rru_A3013at 3470.386 kb on - strand, within Rru_A3013at 3470.469 kb on + strand, within Rru_A3013at 3470.469 kb on + strand, within Rru_A3013at 3470.469 kb on + strand, within Rru_A3013at 3470.469 kb on + strand, within Rru_A3013at 3470.571 kb on + strand, within Rru_A3013at 3470.572 kb on - strand, within Rru_A3013at 3470.572 kb on - strand, within Rru_A3013at 3470.644 kb on + strand, within Rru_A3013at 3470.644 kb on + strand, within Rru_A3013at 3470.670 kb on + strand, within Rru_A3013at 3470.846 kb on + strandat 3470.846 kb on + strandat 3470.972 kb on + strand, within Rru_A3014at 3470.996 kb on + strand, within Rru_A3014at 3470.996 kb on + strand, within Rru_A3014at 3470.997 kb on - strand, within Rru_A3014at 3470.997 kb on - strand, within Rru_A3014at 3470.997 kb on - strand, within Rru_A3014at 3471.119 kb on + strand, within Rru_A3014at 3471.119 kb on + strand, within Rru_A3014at 3471.120 kb on - strand, within Rru_A3014at 3471.120 kb on - strand, within Rru_A3014at 3471.120 kb on - strand, within Rru_A3014at 3471.120 kb on - strand, within Rru_A3014at 3471.230 kb on + strand, within Rru_A3014at 3471.230 kb on + strand, within Rru_A3014at 3471.230 kb on + strand, within Rru_A3014at 3471.230 kb on + strand, within Rru_A3014at 3471.231 kb on - strand, within Rru_A3014at 3471.231 kb on - strand, within Rru_A3014at 3471.231 kb on - strand, within Rru_A3014at 3471.329 kb on + strand, within Rru_A3014at 3471.330 kb on - strand, within Rru_A3014at 3471.330 kb on - strand, within Rru_A3014at 3471.398 kb on + strand, within Rru_A3014at 3471.399 kb on - strand, within Rru_A3014at 3471.446 kb on + strand, within Rru_A3014at 3471.447 kb on - strand, within Rru_A3014at 3471.447 kb on - strand, within Rru_A3014at 3471.516 kb on - strand, within Rru_A3014at 3471.516 kb on - strand, within Rru_A3014at 3471.516 kb on - strand, within Rru_A3014at 3471.518 kb on + strand, within Rru_A3014at 3471.518 kb on + strand, within Rru_A3014at 3471.518 kb on + strand, within Rru_A3014at 3471.519 kb on - strand, within Rru_A3014at 3471.519 kb on - strand, within Rru_A3014at 3471.519 kb on - strand, within Rru_A3014at 3471.519 kb on - strand, within Rru_A3014at 3471.529 kb on + strand, within Rru_A3014at 3471.630 kb on + strand, within Rru_A3014at 3471.631 kb on - strand, within Rru_A3014

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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3,469,086 + -1.5
3,469,086 + +0.1
3,469,087 - +0.1
3,469,087 - +0.1
3,469,122 + +0.1
3,469,123 - +0.5
3,469,262 + Rru_A3012 0.13 +0.1
3,469,262 + Rru_A3012 0.13 +0.1
3,469,263 - Rru_A3012 0.13 -0.9
3,469,263 - Rru_A3012 0.13 +0.1
3,469,263 - Rru_A3012 0.13 +0.1
3,469,283 + Rru_A3012 0.16 +0.1
3,469,285 + Rru_A3012 0.16 +0.1
3,469,286 - Rru_A3012 0.16 +0.1
3,469,286 - Rru_A3012 0.16 +0.1
3,469,286 - Rru_A3012 0.16 -1.1
3,469,286 - Rru_A3012 0.16 -1.1
3,469,322 + Rru_A3012 0.20 +0.1
3,469,324 + Rru_A3012 0.21 +0.1
3,469,483 + Rru_A3012 0.40 +0.1
3,469,483 + Rru_A3012 0.40 -0.9
3,469,483 + Rru_A3012 0.40 -0.6
3,469,483 + Rru_A3012 0.40 +0.1
3,469,484 - Rru_A3012 0.41 +0.1
3,469,484 - Rru_A3012 0.41 -1.0
3,469,551 - Rru_A3012 0.49 +0.1
3,469,551 - Rru_A3012 0.49 +0.1
3,469,551 - Rru_A3012 0.49 -1.1
3,469,675 + Rru_A3012 0.64 +0.1
3,469,754 + Rru_A3012 0.74 +0.1
3,469,754 + Rru_A3012 0.74 +0.1
3,469,754 + Rru_A3012 0.74 -1.3
3,469,755 - Rru_A3012 0.74 -0.3
3,469,755 - Rru_A3012 0.74 -1.3
3,469,837 + Rru_A3012 0.84 +0.1
3,469,885 + +0.1
3,469,886 - -1.3
3,469,886 - +0.1
3,469,886 - +0.1
3,469,886 - -1.0
3,469,886 - +0.1
3,469,955 + +0.1
3,469,955 + +0.1
3,469,956 - -0.9
3,470,091 + Rru_A3013 0.14 +0.1
3,470,092 - Rru_A3013 0.14 +0.1
3,470,346 + Rru_A3013 0.43 +0.1
3,470,346 + Rru_A3013 0.43 -0.6
3,470,346 + Rru_A3013 0.43 +0.1
3,470,347 - Rru_A3013 0.43 +0.1
3,470,347 - Rru_A3013 0.43 +0.1
3,470,347 - Rru_A3013 0.43 -1.1
3,470,352 + Rru_A3013 0.44 +0.1
3,470,352 + Rru_A3013 0.44 +0.1
3,470,352 + Rru_A3013 0.44 -1.1
3,470,352 + Rru_A3013 0.44 -1.0
3,470,352 + Rru_A3013 0.44 -1.3
3,470,352 + Rru_A3013 0.44 +0.1
3,470,352 + Rru_A3013 0.44 +0.1
3,470,352 + Rru_A3013 0.44 +0.1
3,470,352 + Rru_A3013 0.44 +0.1
3,470,353 - Rru_A3013 0.44 +0.1
3,470,353 - Rru_A3013 0.44 +0.1
3,470,353 - Rru_A3013 0.44 +0.1
3,470,353 - Rru_A3013 0.44 +0.1
3,470,353 - Rru_A3013 0.44 -0.4
3,470,353 - Rru_A3013 0.44 -0.2
3,470,353 - Rru_A3013 0.44 +0.1
3,470,385 + Rru_A3013 0.48 -0.9
3,470,385 + Rru_A3013 0.48 +0.1
3,470,386 - Rru_A3013 0.48 +0.1
3,470,386 - Rru_A3013 0.48 +0.1
3,470,469 + Rru_A3013 0.57 +0.1
3,470,469 + Rru_A3013 0.57 +0.1
3,470,469 + Rru_A3013 0.57 -0.3
3,470,469 + Rru_A3013 0.57 +0.1
3,470,571 + Rru_A3013 0.69 -0.1
3,470,572 - Rru_A3013 0.69 +0.1
3,470,572 - Rru_A3013 0.69 -0.7
3,470,644 + Rru_A3013 0.77 -1.1
3,470,644 + Rru_A3013 0.77 +0.1
3,470,670 + Rru_A3013 0.80 -2.1
3,470,846 + +0.1
3,470,846 + +0.1
3,470,972 + Rru_A3014 0.12 +0.1
3,470,996 + Rru_A3014 0.14 +0.1
3,470,996 + Rru_A3014 0.14 +0.1
3,470,997 - Rru_A3014 0.14 -1.2
3,470,997 - Rru_A3014 0.14 -0.9
3,470,997 - Rru_A3014 0.14 +0.1
3,471,119 + Rru_A3014 0.25 -1.3
3,471,119 + Rru_A3014 0.25 -1.6
3,471,120 - Rru_A3014 0.25 +0.1
3,471,120 - Rru_A3014 0.25 -1.4
3,471,120 - Rru_A3014 0.25 -0.9
3,471,120 - Rru_A3014 0.25 +0.1
3,471,230 + Rru_A3014 0.35 +0.1
3,471,230 + Rru_A3014 0.35 -1.3
3,471,230 + Rru_A3014 0.35 +0.1
3,471,230 + Rru_A3014 0.35 +0.1
3,471,231 - Rru_A3014 0.35 +0.1
3,471,231 - Rru_A3014 0.35 -1.7
3,471,231 - Rru_A3014 0.35 +0.1
3,471,329 + Rru_A3014 0.44 +0.1
3,471,330 - Rru_A3014 0.44 -0.9
3,471,330 - Rru_A3014 0.44 +0.1
3,471,398 + Rru_A3014 0.51 +0.1
3,471,399 - Rru_A3014 0.51 +0.1
3,471,446 + Rru_A3014 0.55 -0.8
3,471,447 - Rru_A3014 0.55 +0.1
3,471,447 - Rru_A3014 0.55 +0.1
3,471,516 - Rru_A3014 0.61 +0.1
3,471,516 - Rru_A3014 0.61 +0.1
3,471,516 - Rru_A3014 0.61 +0.1
3,471,518 + Rru_A3014 0.61 +0.1
3,471,518 + Rru_A3014 0.61 +0.1
3,471,518 + Rru_A3014 0.61 -1.1
3,471,519 - Rru_A3014 0.62 +0.1
3,471,519 - Rru_A3014 0.62 +0.1
3,471,519 - Rru_A3014 0.62 +0.1
3,471,519 - Rru_A3014 0.62 +0.1
3,471,529 + Rru_A3014 0.62 +0.1
3,471,630 + Rru_A3014 0.72 -0.9
3,471,631 - Rru_A3014 0.72 -1.2

Or see this region's nucleotide sequence