Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2947 and Rru_A2948 are separated by 141 nucleotides Rru_A2948 and Rru_A2949 overlap by 11 nucleotides Rru_A2949 and Rru_AR0057 are separated by 262 nucleotides Rru_AR0057 and Rru_A2950 are separated by 56 nucleotides
Rru_A2947: Rru_A2947 - Glucose-6-phosphate isomerase (NCBI), at 3,396,863 to 3,398,506
_A2947
Rru_A2948: Rru_A2948 - hypothetical protein (NCBI), at 3,398,648 to 3,399,217
_A2948
Rru_A2949: Rru_A2949 - hypothetical protein (NCBI), at 3,399,207 to 3,399,494
_A2949
Rru_AR0057: Rru_AR0057 - tRNA-Pro (NCBI), at 3,399,757 to 3,399,833
_AR0057
Rru_A2950: Rru_A2950 - Farnesyltranstransferase (NCBI), at 3,399,890 to 3,400,972
_A2950
Position (kb)
3398
3399
3400 Strain fitness (log2 ratio)
-1
0
1 at 3398.548 kb on - strand at 3398.664 kb on + strand at 3398.665 kb on - strand at 3398.897 kb on - strand, within Rru_A2948 at 3398.897 kb on - strand, within Rru_A2948 at 3399.023 kb on + strand, within Rru_A2948 at 3399.062 kb on + strand, within Rru_A2948 at 3399.070 kb on + strand, within Rru_A2948 at 3399.070 kb on + strand, within Rru_A2948 at 3399.070 kb on + strand, within Rru_A2948 at 3399.071 kb on - strand, within Rru_A2948 at 3399.072 kb on + strand, within Rru_A2948 at 3399.072 kb on + strand, within Rru_A2948 at 3399.073 kb on - strand, within Rru_A2948 at 3399.073 kb on - strand, within Rru_A2948 at 3399.082 kb on + strand, within Rru_A2948 at 3399.298 kb on + strand, within Rru_A2949 at 3399.298 kb on + strand, within Rru_A2949 at 3399.298 kb on + strand, within Rru_A2949 at 3399.298 kb on + strand, within Rru_A2949 at 3399.298 kb on + strand, within Rru_A2949 at 3399.298 kb on + strand, within Rru_A2949 at 3399.299 kb on - strand, within Rru_A2949 at 3399.299 kb on - strand, within Rru_A2949 at 3399.299 kb on - strand, within Rru_A2949 at 3399.299 kb on - strand, within Rru_A2949 at 3399.318 kb on - strand, within Rru_A2949 at 3399.342 kb on - strand, within Rru_A2949 at 3399.395 kb on + strand, within Rru_A2949 at 3399.396 kb on - strand, within Rru_A2949 at 3399.427 kb on + strand, within Rru_A2949 at 3399.427 kb on + strand, within Rru_A2949 at 3399.428 kb on - strand, within Rru_A2949 at 3399.518 kb on + strand at 3399.518 kb on + strand at 3399.622 kb on + strand at 3399.623 kb on - strand at 3399.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 3,398,548 - +0.0 3,398,664 + +0.0 3,398,665 - +0.0 3,398,897 - Rru_A2948 0.44 +0.0 3,398,897 - Rru_A2948 0.44 -0.7 3,399,023 + Rru_A2948 0.66 +0.0 3,399,062 + Rru_A2948 0.73 +0.0 3,399,070 + Rru_A2948 0.74 +0.0 3,399,070 + Rru_A2948 0.74 +0.0 3,399,070 + Rru_A2948 0.74 +0.0 3,399,071 - Rru_A2948 0.74 +0.0 3,399,072 + Rru_A2948 0.74 -0.2 3,399,072 + Rru_A2948 0.74 +0.0 3,399,073 - Rru_A2948 0.75 +0.0 3,399,073 - Rru_A2948 0.75 +0.0 3,399,082 + Rru_A2948 0.76 +0.0 3,399,298 + Rru_A2949 0.32 -0.5 3,399,298 + Rru_A2949 0.32 +0.0 3,399,298 + Rru_A2949 0.32 +0.0 3,399,298 + Rru_A2949 0.32 +0.0 3,399,298 + Rru_A2949 0.32 -0.5 3,399,298 + Rru_A2949 0.32 +0.0 3,399,299 - Rru_A2949 0.32 +0.0 3,399,299 - Rru_A2949 0.32 +0.0 3,399,299 - Rru_A2949 0.32 -1.0 3,399,299 - Rru_A2949 0.32 +0.0 3,399,318 - Rru_A2949 0.39 +0.0 3,399,342 - Rru_A2949 0.47 -0.7 3,399,395 + Rru_A2949 0.65 -0.5 3,399,396 - Rru_A2949 0.66 +0.0 3,399,427 + Rru_A2949 0.76 +0.0 3,399,427 + Rru_A2949 0.76 +0.0 3,399,428 - Rru_A2949 0.77 +0.0 3,399,518 + +0.0 3,399,518 + +0.0 3,399,622 + +0.0 3,399,623 - +0.0 3,399,623 - -1.0
Or see this region's nucleotide sequence