Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2948

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2947 and Rru_A2948 are separated by 141 nucleotidesRru_A2948 and Rru_A2949 overlap by 11 nucleotidesRru_A2949 and Rru_AR0057 are separated by 262 nucleotidesRru_AR0057 and Rru_A2950 are separated by 56 nucleotides Rru_A2947: Rru_A2947 - Glucose-6-phosphate isomerase (NCBI), at 3,396,863 to 3,398,506 _A2947 Rru_A2948: Rru_A2948 - hypothetical protein (NCBI), at 3,398,648 to 3,399,217 _A2948 Rru_A2949: Rru_A2949 - hypothetical protein (NCBI), at 3,399,207 to 3,399,494 _A2949 Rru_AR0057: Rru_AR0057 - tRNA-Pro (NCBI), at 3,399,757 to 3,399,833 _AR0057 Rru_A2950: Rru_A2950 - Farnesyltranstransferase (NCBI), at 3,399,890 to 3,400,972 _A2950 Position (kb) 3398 3399 3400Strain fitness (log2 ratio) -1 0 1at 3398.548 kb on - strandat 3398.664 kb on + strandat 3398.665 kb on - strandat 3398.897 kb on - strand, within Rru_A2948at 3398.897 kb on - strand, within Rru_A2948at 3399.023 kb on + strand, within Rru_A2948at 3399.062 kb on + strand, within Rru_A2948at 3399.070 kb on + strand, within Rru_A2948at 3399.070 kb on + strand, within Rru_A2948at 3399.070 kb on + strand, within Rru_A2948at 3399.071 kb on - strand, within Rru_A2948at 3399.072 kb on + strand, within Rru_A2948at 3399.072 kb on + strand, within Rru_A2948at 3399.073 kb on - strand, within Rru_A2948at 3399.073 kb on - strand, within Rru_A2948at 3399.082 kb on + strand, within Rru_A2948at 3399.298 kb on + strand, within Rru_A2949at 3399.298 kb on + strand, within Rru_A2949at 3399.298 kb on + strand, within Rru_A2949at 3399.298 kb on + strand, within Rru_A2949at 3399.298 kb on + strand, within Rru_A2949at 3399.298 kb on + strand, within Rru_A2949at 3399.299 kb on - strand, within Rru_A2949at 3399.299 kb on - strand, within Rru_A2949at 3399.299 kb on - strand, within Rru_A2949at 3399.299 kb on - strand, within Rru_A2949at 3399.318 kb on - strand, within Rru_A2949at 3399.342 kb on - strand, within Rru_A2949at 3399.395 kb on + strand, within Rru_A2949at 3399.396 kb on - strand, within Rru_A2949at 3399.427 kb on + strand, within Rru_A2949at 3399.427 kb on + strand, within Rru_A2949at 3399.428 kb on - strand, within Rru_A2949at 3399.518 kb on + strandat 3399.518 kb on + strandat 3399.622 kb on + strandat 3399.623 kb on - strandat 3399.623 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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3,398,548 - +0.0
3,398,664 + +0.0
3,398,665 - +0.0
3,398,897 - Rru_A2948 0.44 +0.0
3,398,897 - Rru_A2948 0.44 -0.7
3,399,023 + Rru_A2948 0.66 +0.0
3,399,062 + Rru_A2948 0.73 +0.0
3,399,070 + Rru_A2948 0.74 +0.0
3,399,070 + Rru_A2948 0.74 +0.0
3,399,070 + Rru_A2948 0.74 +0.0
3,399,071 - Rru_A2948 0.74 +0.0
3,399,072 + Rru_A2948 0.74 -0.2
3,399,072 + Rru_A2948 0.74 +0.0
3,399,073 - Rru_A2948 0.75 +0.0
3,399,073 - Rru_A2948 0.75 +0.0
3,399,082 + Rru_A2948 0.76 +0.0
3,399,298 + Rru_A2949 0.32 -0.5
3,399,298 + Rru_A2949 0.32 +0.0
3,399,298 + Rru_A2949 0.32 +0.0
3,399,298 + Rru_A2949 0.32 +0.0
3,399,298 + Rru_A2949 0.32 -0.5
3,399,298 + Rru_A2949 0.32 +0.0
3,399,299 - Rru_A2949 0.32 +0.0
3,399,299 - Rru_A2949 0.32 +0.0
3,399,299 - Rru_A2949 0.32 -1.0
3,399,299 - Rru_A2949 0.32 +0.0
3,399,318 - Rru_A2949 0.39 +0.0
3,399,342 - Rru_A2949 0.47 -0.7
3,399,395 + Rru_A2949 0.65 -0.5
3,399,396 - Rru_A2949 0.66 +0.0
3,399,427 + Rru_A2949 0.76 +0.0
3,399,427 + Rru_A2949 0.76 +0.0
3,399,428 - Rru_A2949 0.77 +0.0
3,399,518 + +0.0
3,399,518 + +0.0
3,399,622 + +0.0
3,399,623 - +0.0
3,399,623 - -1.0

Or see this region's nucleotide sequence