Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2831

Experiment: L-Malic Acid (C) and N2; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2829 and Rru_A2830 overlap by 4 nucleotidesRru_A2830 and Rru_A2831 are separated by 15 nucleotidesRru_A2831 and Rru_A2832 are separated by 213 nucleotides Rru_A2829: Rru_A2829 - hypothetical protein (NCBI), at 3,260,615 to 3,261,046 _A2829 Rru_A2830: Rru_A2830 - Flagellar transport protein FliP (NCBI), at 3,261,043 to 3,261,837 _A2830 Rru_A2831: Rru_A2831 - Acyltransferase 3 (NCBI), at 3,261,853 to 3,263,058 _A2831 Rru_A2832: Rru_A2832 - hypothetical protein (NCBI), at 3,263,272 to 3,266,667 _A2832 Position (kb) 3261 3262 3263 3264Strain fitness (log2 ratio) -1 0 1at 3261.794 kb on - strandat 3261.794 kb on - strandat 3261.823 kb on + strandat 3261.823 kb on + strandat 3261.824 kb on - strandat 3261.824 kb on - strandat 3262.103 kb on + strand, within Rru_A2831at 3262.103 kb on + strand, within Rru_A2831at 3262.103 kb on + strand, within Rru_A2831at 3262.103 kb on + strand, within Rru_A2831at 3262.103 kb on + strand, within Rru_A2831at 3262.104 kb on - strand, within Rru_A2831at 3262.104 kb on - strand, within Rru_A2831at 3262.104 kb on - strand, within Rru_A2831at 3262.104 kb on - strand, within Rru_A2831at 3262.104 kb on - strand, within Rru_A2831at 3262.104 kb on - strand, within Rru_A2831at 3262.104 kb on - strand, within Rru_A2831at 3262.104 kb on - strand, within Rru_A2831at 3262.104 kb on - strand, within Rru_A2831at 3262.245 kb on - strand, within Rru_A2831at 3262.280 kb on + strand, within Rru_A2831at 3262.281 kb on - strand, within Rru_A2831at 3262.281 kb on - strand, within Rru_A2831at 3262.281 kb on - strand, within Rru_A2831at 3262.281 kb on - strand, within Rru_A2831at 3262.281 kb on - strand, within Rru_A2831at 3262.284 kb on + strand, within Rru_A2831at 3262.284 kb on + strand, within Rru_A2831at 3262.284 kb on + strand, within Rru_A2831at 3262.284 kb on + strand, within Rru_A2831at 3262.285 kb on - strand, within Rru_A2831at 3262.285 kb on - strand, within Rru_A2831at 3262.285 kb on - strand, within Rru_A2831at 3262.310 kb on + strand, within Rru_A2831at 3262.310 kb on + strand, within Rru_A2831at 3262.310 kb on + strand, within Rru_A2831at 3262.310 kb on + strand, within Rru_A2831at 3262.311 kb on - strand, within Rru_A2831at 3262.311 kb on - strand, within Rru_A2831at 3262.416 kb on - strand, within Rru_A2831at 3262.469 kb on + strand, within Rru_A2831at 3262.470 kb on - strand, within Rru_A2831at 3262.497 kb on + strand, within Rru_A2831at 3262.497 kb on + strand, within Rru_A2831at 3262.497 kb on + strand, within Rru_A2831at 3262.566 kb on + strand, within Rru_A2831at 3262.566 kb on + strand, within Rru_A2831at 3262.566 kb on + strand, within Rru_A2831at 3262.566 kb on + strand, within Rru_A2831at 3262.567 kb on - strand, within Rru_A2831at 3262.567 kb on - strand, within Rru_A2831at 3262.567 kb on - strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.568 kb on + strand, within Rru_A2831at 3262.569 kb on - strand, within Rru_A2831at 3262.569 kb on - strand, within Rru_A2831at 3262.569 kb on - strand, within Rru_A2831at 3262.569 kb on - strand, within Rru_A2831at 3262.569 kb on - strand, within Rru_A2831at 3262.662 kb on + strand, within Rru_A2831at 3262.663 kb on - strand, within Rru_A2831at 3262.746 kb on - strand, within Rru_A2831at 3262.748 kb on + strand, within Rru_A2831at 3262.749 kb on - strand, within Rru_A2831at 3262.805 kb on + strand, within Rru_A2831at 3262.948 kb on + strandat 3262.948 kb on + strandat 3262.986 kb on + strandat 3262.986 kb on + strandat 3262.987 kb on - strandat 3262.988 kb on + strandat 3262.989 kb on - strandat 3262.989 kb on - strandat 3263.123 kb on + strandat 3263.123 kb on + strandat 3263.124 kb on - strandat 3263.124 kb on - strandat 3263.133 kb on - strandat 3263.133 kb on - strandat 3263.209 kb on - strandat 3263.238 kb on + strandat 3263.239 kb on - strandat 3263.273 kb on + strandat 3263.273 kb on + strandat 3263.287 kb on + strandat 3263.316 kb on - strandat 3263.316 kb on - strandat 3263.340 kb on + strandat 3263.341 kb on - strandat 3263.341 kb on - strandat 3264.014 kb on + strand, within Rru_A2832at 3264.014 kb on + strand, within Rru_A2832at 3264.015 kb on - strand, within Rru_A2832at 3264.015 kb on - strand, within Rru_A2832at 3264.015 kb on - strand, within Rru_A2832

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
remove
3,261,794 - -0.0
3,261,794 - -0.3
3,261,823 + -0.5
3,261,823 + -1.6
3,261,824 - -0.6
3,261,824 - -0.0
3,262,103 + Rru_A2831 0.21 -0.0
3,262,103 + Rru_A2831 0.21 -0.0
3,262,103 + Rru_A2831 0.21 -0.0
3,262,103 + Rru_A2831 0.21 -1.0
3,262,103 + Rru_A2831 0.21 -0.0
3,262,104 - Rru_A2831 0.21 -1.0
3,262,104 - Rru_A2831 0.21 -0.0
3,262,104 - Rru_A2831 0.21 -0.6
3,262,104 - Rru_A2831 0.21 -0.0
3,262,104 - Rru_A2831 0.21 -0.0
3,262,104 - Rru_A2831 0.21 -1.0
3,262,104 - Rru_A2831 0.21 -0.5
3,262,104 - Rru_A2831 0.21 -0.5
3,262,104 - Rru_A2831 0.21 -0.0
3,262,245 - Rru_A2831 0.33 -0.0
3,262,280 + Rru_A2831 0.35 -0.3
3,262,281 - Rru_A2831 0.35 -0.0
3,262,281 - Rru_A2831 0.35 +1.6
3,262,281 - Rru_A2831 0.35 -1.0
3,262,281 - Rru_A2831 0.35 -0.0
3,262,281 - Rru_A2831 0.35 -0.0
3,262,284 + Rru_A2831 0.36 -0.0
3,262,284 + Rru_A2831 0.36 -0.0
3,262,284 + Rru_A2831 0.36 -0.5
3,262,284 + Rru_A2831 0.36 -0.0
3,262,285 - Rru_A2831 0.36 -0.0
3,262,285 - Rru_A2831 0.36 -0.7
3,262,285 - Rru_A2831 0.36 -0.8
3,262,310 + Rru_A2831 0.38 -0.0
3,262,310 + Rru_A2831 0.38 -0.0
3,262,310 + Rru_A2831 0.38 -0.0
3,262,310 + Rru_A2831 0.38 -0.0
3,262,311 - Rru_A2831 0.38 -0.0
3,262,311 - Rru_A2831 0.38 -0.5
3,262,416 - Rru_A2831 0.47 -1.6
3,262,469 + Rru_A2831 0.51 -0.0
3,262,470 - Rru_A2831 0.51 -0.0
3,262,497 + Rru_A2831 0.53 -0.0
3,262,497 + Rru_A2831 0.53 -0.0
3,262,497 + Rru_A2831 0.53 -0.0
3,262,566 + Rru_A2831 0.59 -0.0
3,262,566 + Rru_A2831 0.59 -0.1
3,262,566 + Rru_A2831 0.59 -0.3
3,262,566 + Rru_A2831 0.59 -0.0
3,262,567 - Rru_A2831 0.59 -0.0
3,262,567 - Rru_A2831 0.59 -0.0
3,262,567 - Rru_A2831 0.59 -0.0
3,262,568 + Rru_A2831 0.59 -0.6
3,262,568 + Rru_A2831 0.59 -0.0
3,262,568 + Rru_A2831 0.59 -0.0
3,262,568 + Rru_A2831 0.59 -0.0
3,262,568 + Rru_A2831 0.59 -0.0
3,262,568 + Rru_A2831 0.59 -0.0
3,262,568 + Rru_A2831 0.59 -0.0
3,262,568 + Rru_A2831 0.59 -0.0
3,262,568 + Rru_A2831 0.59 -0.5
3,262,568 + Rru_A2831 0.59 -0.0
3,262,568 + Rru_A2831 0.59 -0.4
3,262,568 + Rru_A2831 0.59 -1.0
3,262,569 - Rru_A2831 0.59 -0.0
3,262,569 - Rru_A2831 0.59 -0.0
3,262,569 - Rru_A2831 0.59 -0.0
3,262,569 - Rru_A2831 0.59 -0.0
3,262,569 - Rru_A2831 0.59 -0.0
3,262,662 + Rru_A2831 0.67 -0.0
3,262,663 - Rru_A2831 0.67 -1.0
3,262,746 - Rru_A2831 0.74 -1.0
3,262,748 + Rru_A2831 0.74 -0.0
3,262,749 - Rru_A2831 0.74 -1.0
3,262,805 + Rru_A2831 0.79 -0.0
3,262,948 + -0.0
3,262,948 + -0.0
3,262,986 + -0.0
3,262,986 + -0.0
3,262,987 - -0.0
3,262,988 + -0.0
3,262,989 - -0.0
3,262,989 - -0.0
3,263,123 + -0.0
3,263,123 + -0.0
3,263,124 - -0.0
3,263,124 - -0.0
3,263,133 - -0.0
3,263,133 - -1.0
3,263,209 - -0.0
3,263,238 + -0.0
3,263,239 - -0.0
3,263,273 + -0.0
3,263,273 + -0.0
3,263,287 + -0.0
3,263,316 - -0.0
3,263,316 - -0.0
3,263,340 + -0.0
3,263,341 - -0.1
3,263,341 - -0.0
3,264,014 + Rru_A2832 0.22 -1.0
3,264,014 + Rru_A2832 0.22 -0.0
3,264,015 - Rru_A2832 0.22 -0.0
3,264,015 - Rru_A2832 0.22 -0.0
3,264,015 - Rru_A2832 0.22 -0.0

Or see this region's nucleotide sequence