Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2829 and Rru_A2830 overlap by 4 nucleotides Rru_A2830 and Rru_A2831 are separated by 15 nucleotides Rru_A2831 and Rru_A2832 are separated by 213 nucleotides
Rru_A2829: Rru_A2829 - hypothetical protein (NCBI), at 3,260,615 to 3,261,046
_A2829
Rru_A2830: Rru_A2830 - Flagellar transport protein FliP (NCBI), at 3,261,043 to 3,261,837
_A2830
Rru_A2831: Rru_A2831 - Acyltransferase 3 (NCBI), at 3,261,853 to 3,263,058
_A2831
Rru_A2832: Rru_A2832 - hypothetical protein (NCBI), at 3,263,272 to 3,266,667
_A2832
Position (kb)
3261
3262
3263
3264 Strain fitness (log2 ratio)
-1
0
1 at 3261.794 kb on - strand at 3261.794 kb on - strand at 3261.823 kb on + strand at 3261.823 kb on + strand at 3261.824 kb on - strand at 3261.824 kb on - strand at 3262.103 kb on + strand, within Rru_A2831 at 3262.103 kb on + strand, within Rru_A2831 at 3262.103 kb on + strand, within Rru_A2831 at 3262.103 kb on + strand, within Rru_A2831 at 3262.103 kb on + strand, within Rru_A2831 at 3262.104 kb on - strand, within Rru_A2831 at 3262.104 kb on - strand, within Rru_A2831 at 3262.104 kb on - strand, within Rru_A2831 at 3262.104 kb on - strand, within Rru_A2831 at 3262.104 kb on - strand, within Rru_A2831 at 3262.104 kb on - strand, within Rru_A2831 at 3262.104 kb on - strand, within Rru_A2831 at 3262.104 kb on - strand, within Rru_A2831 at 3262.104 kb on - strand, within Rru_A2831 at 3262.245 kb on - strand, within Rru_A2831 at 3262.280 kb on + strand, within Rru_A2831 at 3262.281 kb on - strand, within Rru_A2831 at 3262.281 kb on - strand, within Rru_A2831 at 3262.281 kb on - strand, within Rru_A2831 at 3262.281 kb on - strand, within Rru_A2831 at 3262.281 kb on - strand, within Rru_A2831 at 3262.284 kb on + strand, within Rru_A2831 at 3262.284 kb on + strand, within Rru_A2831 at 3262.284 kb on + strand, within Rru_A2831 at 3262.284 kb on + strand, within Rru_A2831 at 3262.285 kb on - strand, within Rru_A2831 at 3262.285 kb on - strand, within Rru_A2831 at 3262.285 kb on - strand, within Rru_A2831 at 3262.310 kb on + strand, within Rru_A2831 at 3262.310 kb on + strand, within Rru_A2831 at 3262.310 kb on + strand, within Rru_A2831 at 3262.310 kb on + strand, within Rru_A2831 at 3262.311 kb on - strand, within Rru_A2831 at 3262.311 kb on - strand, within Rru_A2831 at 3262.416 kb on - strand, within Rru_A2831 at 3262.469 kb on + strand, within Rru_A2831 at 3262.470 kb on - strand, within Rru_A2831 at 3262.497 kb on + strand, within Rru_A2831 at 3262.497 kb on + strand, within Rru_A2831 at 3262.497 kb on + strand, within Rru_A2831 at 3262.566 kb on + strand, within Rru_A2831 at 3262.566 kb on + strand, within Rru_A2831 at 3262.566 kb on + strand, within Rru_A2831 at 3262.566 kb on + strand, within Rru_A2831 at 3262.567 kb on - strand, within Rru_A2831 at 3262.567 kb on - strand, within Rru_A2831 at 3262.567 kb on - strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.568 kb on + strand, within Rru_A2831 at 3262.569 kb on - strand, within Rru_A2831 at 3262.569 kb on - strand, within Rru_A2831 at 3262.569 kb on - strand, within Rru_A2831 at 3262.569 kb on - strand, within Rru_A2831 at 3262.569 kb on - strand, within Rru_A2831 at 3262.662 kb on + strand, within Rru_A2831 at 3262.663 kb on - strand, within Rru_A2831 at 3262.746 kb on - strand, within Rru_A2831 at 3262.748 kb on + strand, within Rru_A2831 at 3262.749 kb on - strand, within Rru_A2831 at 3262.805 kb on + strand, within Rru_A2831 at 3262.948 kb on + strand at 3262.948 kb on + strand at 3262.986 kb on + strand at 3262.986 kb on + strand at 3262.987 kb on - strand at 3262.988 kb on + strand at 3262.989 kb on - strand at 3262.989 kb on - strand at 3263.123 kb on + strand at 3263.123 kb on + strand at 3263.124 kb on - strand at 3263.124 kb on - strand at 3263.133 kb on - strand at 3263.133 kb on - strand at 3263.209 kb on - strand at 3263.238 kb on + strand at 3263.239 kb on - strand at 3263.273 kb on + strand at 3263.273 kb on + strand at 3263.287 kb on + strand at 3263.316 kb on - strand at 3263.316 kb on - strand at 3263.340 kb on + strand at 3263.341 kb on - strand at 3263.341 kb on - strand at 3264.014 kb on + strand, within Rru_A2832 at 3264.014 kb on + strand, within Rru_A2832 at 3264.015 kb on - strand, within Rru_A2832 at 3264.015 kb on - strand, within Rru_A2832 at 3264.015 kb on - strand, within Rru_A2832
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 3,261,794 - -0.0 3,261,794 - -0.3 3,261,823 + -0.5 3,261,823 + -1.6 3,261,824 - -0.6 3,261,824 - -0.0 3,262,103 + Rru_A2831 0.21 -0.0 3,262,103 + Rru_A2831 0.21 -0.0 3,262,103 + Rru_A2831 0.21 -0.0 3,262,103 + Rru_A2831 0.21 -1.0 3,262,103 + Rru_A2831 0.21 -0.0 3,262,104 - Rru_A2831 0.21 -1.0 3,262,104 - Rru_A2831 0.21 -0.0 3,262,104 - Rru_A2831 0.21 -0.6 3,262,104 - Rru_A2831 0.21 -0.0 3,262,104 - Rru_A2831 0.21 -0.0 3,262,104 - Rru_A2831 0.21 -1.0 3,262,104 - Rru_A2831 0.21 -0.5 3,262,104 - Rru_A2831 0.21 -0.5 3,262,104 - Rru_A2831 0.21 -0.0 3,262,245 - Rru_A2831 0.33 -0.0 3,262,280 + Rru_A2831 0.35 -0.3 3,262,281 - Rru_A2831 0.35 -0.0 3,262,281 - Rru_A2831 0.35 +1.6 3,262,281 - Rru_A2831 0.35 -1.0 3,262,281 - Rru_A2831 0.35 -0.0 3,262,281 - Rru_A2831 0.35 -0.0 3,262,284 + Rru_A2831 0.36 -0.0 3,262,284 + Rru_A2831 0.36 -0.0 3,262,284 + Rru_A2831 0.36 -0.5 3,262,284 + Rru_A2831 0.36 -0.0 3,262,285 - Rru_A2831 0.36 -0.0 3,262,285 - Rru_A2831 0.36 -0.7 3,262,285 - Rru_A2831 0.36 -0.8 3,262,310 + Rru_A2831 0.38 -0.0 3,262,310 + Rru_A2831 0.38 -0.0 3,262,310 + Rru_A2831 0.38 -0.0 3,262,310 + Rru_A2831 0.38 -0.0 3,262,311 - Rru_A2831 0.38 -0.0 3,262,311 - Rru_A2831 0.38 -0.5 3,262,416 - Rru_A2831 0.47 -1.6 3,262,469 + Rru_A2831 0.51 -0.0 3,262,470 - Rru_A2831 0.51 -0.0 3,262,497 + Rru_A2831 0.53 -0.0 3,262,497 + Rru_A2831 0.53 -0.0 3,262,497 + Rru_A2831 0.53 -0.0 3,262,566 + Rru_A2831 0.59 -0.0 3,262,566 + Rru_A2831 0.59 -0.1 3,262,566 + Rru_A2831 0.59 -0.3 3,262,566 + Rru_A2831 0.59 -0.0 3,262,567 - Rru_A2831 0.59 -0.0 3,262,567 - Rru_A2831 0.59 -0.0 3,262,567 - Rru_A2831 0.59 -0.0 3,262,568 + Rru_A2831 0.59 -0.6 3,262,568 + Rru_A2831 0.59 -0.0 3,262,568 + Rru_A2831 0.59 -0.0 3,262,568 + Rru_A2831 0.59 -0.0 3,262,568 + Rru_A2831 0.59 -0.0 3,262,568 + Rru_A2831 0.59 -0.0 3,262,568 + Rru_A2831 0.59 -0.0 3,262,568 + Rru_A2831 0.59 -0.0 3,262,568 + Rru_A2831 0.59 -0.5 3,262,568 + Rru_A2831 0.59 -0.0 3,262,568 + Rru_A2831 0.59 -0.4 3,262,568 + Rru_A2831 0.59 -1.0 3,262,569 - Rru_A2831 0.59 -0.0 3,262,569 - Rru_A2831 0.59 -0.0 3,262,569 - Rru_A2831 0.59 -0.0 3,262,569 - Rru_A2831 0.59 -0.0 3,262,569 - Rru_A2831 0.59 -0.0 3,262,662 + Rru_A2831 0.67 -0.0 3,262,663 - Rru_A2831 0.67 -1.0 3,262,746 - Rru_A2831 0.74 -1.0 3,262,748 + Rru_A2831 0.74 -0.0 3,262,749 - Rru_A2831 0.74 -1.0 3,262,805 + Rru_A2831 0.79 -0.0 3,262,948 + -0.0 3,262,948 + -0.0 3,262,986 + -0.0 3,262,986 + -0.0 3,262,987 - -0.0 3,262,988 + -0.0 3,262,989 - -0.0 3,262,989 - -0.0 3,263,123 + -0.0 3,263,123 + -0.0 3,263,124 - -0.0 3,263,124 - -0.0 3,263,133 - -0.0 3,263,133 - -1.0 3,263,209 - -0.0 3,263,238 + -0.0 3,263,239 - -0.0 3,263,273 + -0.0 3,263,273 + -0.0 3,263,287 + -0.0 3,263,316 - -0.0 3,263,316 - -0.0 3,263,340 + -0.0 3,263,341 - -0.1 3,263,341 - -0.0 3,264,014 + Rru_A2832 0.22 -1.0 3,264,014 + Rru_A2832 0.22 -0.0 3,264,015 - Rru_A2832 0.22 -0.0 3,264,015 - Rru_A2832 0.22 -0.0 3,264,015 - Rru_A2832 0.22 -0.0
Or see this region's nucleotide sequence