Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2791 and Rru_A2792 are separated by 54 nucleotides Rru_A2792 and Rru_A2793 are separated by 6 nucleotides Rru_A2793 and Rru_A2794 are separated by 95 nucleotides Rru_A2794 and Rru_A2795 are separated by 21 nucleotides
Rru_A2791: Rru_A2791 - DeoxyUTP pyrophosphatase subfamily 1 (NCBI), at 3,225,908 to 3,226,372
_A2791
Rru_A2792: Rru_A2792 - Thymidylate synthase (FAD) (NCBI), at 3,226,427 to 3,227,284
_A2792
Rru_A2793: Rru_A2793 - Protein of unknown function DUF1006 (NCBI), at 3,227,291 to 3,228,472
_A2793
Rru_A2794: Rru_A2794 - Deoxycytidine triphosphate deaminase (NCBI), at 3,228,568 to 3,229,155
_A2794
Rru_A2795: Rru_A2795 - hypothetical protein (NCBI), at 3,229,177 to 3,229,581
_A2795
Position (kb)
3227
3228
3229 Strain fitness (log2 ratio)
-1
0
1 at 3227.282 kb on + strand at 3227.282 kb on + strand at 3227.282 kb on + strand at 3227.283 kb on - strand at 3227.371 kb on + strand at 3227.489 kb on + strand, within Rru_A2793 at 3227.489 kb on + strand, within Rru_A2793 at 3227.490 kb on - strand, within Rru_A2793 at 3227.519 kb on + strand, within Rru_A2793 at 3227.519 kb on + strand, within Rru_A2793 at 3227.519 kb on + strand, within Rru_A2793 at 3227.520 kb on - strand, within Rru_A2793 at 3227.520 kb on - strand, within Rru_A2793 at 3227.550 kb on - strand, within Rru_A2793 at 3227.639 kb on + strand, within Rru_A2793 at 3227.639 kb on + strand, within Rru_A2793 at 3227.639 kb on + strand, within Rru_A2793 at 3227.639 kb on + strand, within Rru_A2793 at 3227.639 kb on + strand, within Rru_A2793 at 3227.640 kb on - strand, within Rru_A2793 at 3227.640 kb on - strand, within Rru_A2793 at 3227.858 kb on + strand, within Rru_A2793 at 3227.858 kb on + strand, within Rru_A2793 at 3227.859 kb on - strand, within Rru_A2793 at 3227.994 kb on - strand, within Rru_A2793 at 3228.095 kb on + strand, within Rru_A2793 at 3228.096 kb on - strand, within Rru_A2793 at 3228.099 kb on + strand, within Rru_A2793 at 3228.099 kb on + strand, within Rru_A2793 at 3228.099 kb on + strand, within Rru_A2793 at 3228.100 kb on - strand, within Rru_A2793 at 3228.100 kb on - strand, within Rru_A2793 at 3228.100 kb on - strand, within Rru_A2793 at 3228.209 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.224 kb on + strand, within Rru_A2793 at 3228.225 kb on - strand, within Rru_A2793 at 3228.225 kb on - strand, within Rru_A2793 at 3228.225 kb on - strand, within Rru_A2793 at 3228.225 kb on - strand, within Rru_A2793 at 3228.248 kb on + strand, within Rru_A2793 at 3228.254 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.257 kb on + strand, within Rru_A2793 at 3228.258 kb on - strand, within Rru_A2793 at 3228.258 kb on - strand, within Rru_A2793 at 3228.258 kb on - strand, within Rru_A2793 at 3228.258 kb on - strand, within Rru_A2793 at 3229.153 kb on + strand at 3229.422 kb on - strand, within Rru_A2795
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 3,227,282 + -0.0 3,227,282 + -0.8 3,227,282 + -0.0 3,227,283 - -1.0 3,227,371 + -0.0 3,227,489 + Rru_A2793 0.17 -1.0 3,227,489 + Rru_A2793 0.17 -0.0 3,227,490 - Rru_A2793 0.17 -0.0 3,227,519 + Rru_A2793 0.19 -0.0 3,227,519 + Rru_A2793 0.19 -0.0 3,227,519 + Rru_A2793 0.19 -0.8 3,227,520 - Rru_A2793 0.19 -0.5 3,227,520 - Rru_A2793 0.19 -0.9 3,227,550 - Rru_A2793 0.22 -1.0 3,227,639 + Rru_A2793 0.29 -0.0 3,227,639 + Rru_A2793 0.29 -0.8 3,227,639 + Rru_A2793 0.29 -1.0 3,227,639 + Rru_A2793 0.29 -0.0 3,227,639 + Rru_A2793 0.29 -0.9 3,227,640 - Rru_A2793 0.30 -0.0 3,227,640 - Rru_A2793 0.30 -1.0 3,227,858 + Rru_A2793 0.48 -0.0 3,227,858 + Rru_A2793 0.48 -0.0 3,227,859 - Rru_A2793 0.48 -0.0 3,227,994 - Rru_A2793 0.59 -0.0 3,228,095 + Rru_A2793 0.68 -0.0 3,228,096 - Rru_A2793 0.68 -0.0 3,228,099 + Rru_A2793 0.68 -0.0 3,228,099 + Rru_A2793 0.68 -0.0 3,228,099 + Rru_A2793 0.68 -0.0 3,228,100 - Rru_A2793 0.68 -0.5 3,228,100 - Rru_A2793 0.68 -0.0 3,228,100 - Rru_A2793 0.68 -0.8 3,228,209 + Rru_A2793 0.78 -0.4 3,228,224 + Rru_A2793 0.79 -0.0 3,228,224 + Rru_A2793 0.79 -0.0 3,228,224 + Rru_A2793 0.79 -1.0 3,228,224 + Rru_A2793 0.79 -1.0 3,228,224 + Rru_A2793 0.79 -0.9 3,228,224 + Rru_A2793 0.79 -0.0 3,228,224 + Rru_A2793 0.79 -0.0 3,228,225 - Rru_A2793 0.79 -0.0 3,228,225 - Rru_A2793 0.79 -0.0 3,228,225 - Rru_A2793 0.79 -1.2 3,228,225 - Rru_A2793 0.79 -1.3 3,228,248 + Rru_A2793 0.81 -0.8 3,228,254 + Rru_A2793 0.81 -1.0 3,228,257 + Rru_A2793 0.82 -0.0 3,228,257 + Rru_A2793 0.82 -0.0 3,228,257 + Rru_A2793 0.82 -1.0 3,228,257 + Rru_A2793 0.82 -0.3 3,228,257 + Rru_A2793 0.82 -1.0 3,228,257 + Rru_A2793 0.82 -0.0 3,228,257 + Rru_A2793 0.82 -0.0 3,228,257 + Rru_A2793 0.82 -0.0 3,228,257 + Rru_A2793 0.82 -0.0 3,228,257 + Rru_A2793 0.82 -1.0 3,228,258 - Rru_A2793 0.82 -0.8 3,228,258 - Rru_A2793 0.82 -0.4 3,228,258 - Rru_A2793 0.82 -0.0 3,228,258 - Rru_A2793 0.82 -1.0 3,229,153 + -0.0 3,229,422 - Rru_A2795 0.60 -0.0
Or see this region's nucleotide sequence