Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2585

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2582 and Rru_A2583 are separated by 193 nucleotidesRru_A2583 and Rru_A2584 overlap by 4 nucleotidesRru_A2584 and Rru_A2585 overlap by 4 nucleotidesRru_A2585 and Rru_A2586 overlap by 4 nucleotidesRru_A2586 and Rru_A2587 are separated by 6 nucleotides Rru_A2582: Rru_A2582 - hypothetical protein (NCBI), at 3,004,490 to 3,005,017 _A2582 Rru_A2583: Rru_A2583 - hypothetical protein (NCBI), at 3,005,211 to 3,005,594 _A2583 Rru_A2584: Rru_A2584 - hypothetical protein (NCBI), at 3,005,591 to 3,005,986 _A2584 Rru_A2585: Rru_A2585 - hypothetical protein (NCBI), at 3,005,983 to 3,006,510 _A2585 Rru_A2586: Rru_A2586 - hypothetical protein (NCBI), at 3,006,507 to 3,006,983 _A2586 Rru_A2587: Rru_A2587 - hypothetical protein (NCBI), at 3,006,990 to 3,008,003 _A2587 Position (kb) 3005 3006 3007Strain fitness (log2 ratio) -2 -1 0 1at 3005.234 kb on - strandat 3006.080 kb on + strand, within Rru_A2585at 3006.080 kb on + strand, within Rru_A2585at 3006.297 kb on + strand, within Rru_A2585at 3006.298 kb on - strand, within Rru_A2585at 3006.298 kb on - strand, within Rru_A2585at 3006.327 kb on - strand, within Rru_A2585at 3006.341 kb on + strand, within Rru_A2585at 3006.341 kb on + strand, within Rru_A2585at 3006.342 kb on - strand, within Rru_A2585at 3006.342 kb on - strand, within Rru_A2585at 3006.342 kb on - strand, within Rru_A2585at 3006.342 kb on - strand, within Rru_A2585at 3006.435 kb on - strand, within Rru_A2585at 3006.435 kb on - strand, within Rru_A2585at 3006.465 kb on + strandat 3007.036 kb on + strandat 3007.037 kb on - strandat 3007.037 kb on - strandat 3007.037 kb on - strandat 3007.151 kb on + strand, within Rru_A2587at 3007.234 kb on + strand, within Rru_A2587at 3007.234 kb on + strand, within Rru_A2587at 3007.261 kb on + strand, within Rru_A2587at 3007.261 kb on + strand, within Rru_A2587at 3007.261 kb on + strand, within Rru_A2587at 3007.261 kb on + strand, within Rru_A2587at 3007.262 kb on - strand, within Rru_A2587at 3007.268 kb on + strand, within Rru_A2587at 3007.268 kb on + strand, within Rru_A2587at 3007.268 kb on + strand, within Rru_A2587at 3007.268 kb on + strand, within Rru_A2587at 3007.268 kb on + strand, within Rru_A2587at 3007.268 kb on + strand, within Rru_A2587at 3007.269 kb on - strand, within Rru_A2587at 3007.269 kb on - strand, within Rru_A2587at 3007.269 kb on - strand, within Rru_A2587at 3007.269 kb on - strand, within Rru_A2587at 3007.269 kb on - strand, within Rru_A2587at 3007.269 kb on - strand, within Rru_A2587at 3007.269 kb on - strand, within Rru_A2587at 3007.270 kb on + strand, within Rru_A2587at 3007.270 kb on + strand, within Rru_A2587at 3007.271 kb on - strand, within Rru_A2587at 3007.271 kb on - strand, within Rru_A2587at 3007.271 kb on - strand, within Rru_A2587at 3007.336 kb on + strand, within Rru_A2587at 3007.336 kb on + strand, within Rru_A2587at 3007.336 kb on + strand, within Rru_A2587at 3007.336 kb on + strand, within Rru_A2587at 3007.336 kb on + strand, within Rru_A2587at 3007.336 kb on + strand, within Rru_A2587at 3007.337 kb on - strand, within Rru_A2587

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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3,005,234 - +0.0
3,006,080 + Rru_A2585 0.18 -0.2
3,006,080 + Rru_A2585 0.18 +0.0
3,006,297 + Rru_A2585 0.59 +0.0
3,006,298 - Rru_A2585 0.60 +0.0
3,006,298 - Rru_A2585 0.60 +0.0
3,006,327 - Rru_A2585 0.65 +0.0
3,006,341 + Rru_A2585 0.68 +0.0
3,006,341 + Rru_A2585 0.68 +0.0
3,006,342 - Rru_A2585 0.68 +0.0
3,006,342 - Rru_A2585 0.68 +0.0
3,006,342 - Rru_A2585 0.68 +0.0
3,006,342 - Rru_A2585 0.68 +0.0
3,006,435 - Rru_A2585 0.86 -0.6
3,006,435 - Rru_A2585 0.86 -0.6
3,006,465 + +0.0
3,007,036 + -1.2
3,007,037 - +0.0
3,007,037 - +0.0
3,007,037 - +0.0
3,007,151 + Rru_A2587 0.16 +0.0
3,007,234 + Rru_A2587 0.24 +0.0
3,007,234 + Rru_A2587 0.24 +0.0
3,007,261 + Rru_A2587 0.27 -0.5
3,007,261 + Rru_A2587 0.27 +0.0
3,007,261 + Rru_A2587 0.27 +0.0
3,007,261 + Rru_A2587 0.27 -0.7
3,007,262 - Rru_A2587 0.27 +0.0
3,007,268 + Rru_A2587 0.27 +0.0
3,007,268 + Rru_A2587 0.27 +0.0
3,007,268 + Rru_A2587 0.27 -0.8
3,007,268 + Rru_A2587 0.27 +0.0
3,007,268 + Rru_A2587 0.27 -0.6
3,007,268 + Rru_A2587 0.27 +0.0
3,007,269 - Rru_A2587 0.28 +0.0
3,007,269 - Rru_A2587 0.28 +0.0
3,007,269 - Rru_A2587 0.28 +0.0
3,007,269 - Rru_A2587 0.28 +0.0
3,007,269 - Rru_A2587 0.28 +0.0
3,007,269 - Rru_A2587 0.28 -0.7
3,007,269 - Rru_A2587 0.28 +0.0
3,007,270 + Rru_A2587 0.28 -0.6
3,007,270 + Rru_A2587 0.28 +0.0
3,007,271 - Rru_A2587 0.28 -0.7
3,007,271 - Rru_A2587 0.28 +0.0
3,007,271 - Rru_A2587 0.28 +0.0
3,007,336 + Rru_A2587 0.34 -1.0
3,007,336 + Rru_A2587 0.34 -1.0
3,007,336 + Rru_A2587 0.34 -0.6
3,007,336 + Rru_A2587 0.34 +0.0
3,007,336 + Rru_A2587 0.34 +0.0
3,007,336 + Rru_A2587 0.34 -2.0
3,007,337 - Rru_A2587 0.34 +0.0

Or see this region's nucleotide sequence