Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1857 and Rru_A1858 are separated by 112 nucleotides Rru_A1858 and Rru_A1859 are separated by 144 nucleotides Rru_A1859 and Rru_A1860 are separated by 27 nucleotides Rru_A1860 and Rru_A1861 are separated by 237 nucleotides
Rru_A1857: Rru_A1857 - RNA polymerase, omega subunit (NCBI), at 2,156,281 to 2,156,697
_A1857
Rru_A1858: Rru_A1858 - 7, 8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK (NCBI), at 2,156,810 to 2,157,295
_A1858
Rru_A1859: Rru_A1859 - Protein of unknown function DUF88 (NCBI), at 2,157,440 to 2,158,084
_A1859
Rru_A1860: Rru_A1860 - Uracil-DNA glycosylase superfamily (NCBI), at 2,158,112 to 2,158,756
_A1860
Rru_A1861: Rru_A1861 - hypothetical protein (NCBI), at 2,158,994 to 2,159,905
_A1861
Position (kb)
2157
2158
2159 Strain fitness (log2 ratio)
-2
-1
0
1 at 2156.811 kb on + strand at 2157.347 kb on - strand at 2157.350 kb on + strand at 2157.377 kb on - strand at 2157.661 kb on + strand, within Rru_A1859 at 2158.070 kb on + strand at 2158.070 kb on + strand at 2158.070 kb on + strand at 2158.070 kb on + strand at 2158.070 kb on + strand at 2158.071 kb on - strand at 2158.072 kb on + strand at 2158.073 kb on - strand at 2158.073 kb on - strand at 2158.082 kb on + strand at 2158.082 kb on + strand at 2158.082 kb on + strand at 2158.083 kb on - strand at 2158.083 kb on - strand at 2158.750 kb on + strand at 2158.750 kb on + strand at 2158.751 kb on - strand at 2158.751 kb on - strand at 2158.751 kb on - strand at 2158.754 kb on + strand at 2158.754 kb on + strand at 2158.795 kb on - strand at 2158.795 kb on - strand at 2158.805 kb on + strand at 2159.059 kb on - strand at 2159.059 kb on - strand at 2159.059 kb on - strand at 2159.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 2,156,811 + -0.1 2,157,347 - -0.5 2,157,350 + -0.1 2,157,377 - -0.1 2,157,661 + Rru_A1859 0.34 -2.3 2,158,070 + -0.1 2,158,070 + -0.3 2,158,070 + -1.0 2,158,070 + -0.1 2,158,070 + -0.1 2,158,071 - -0.8 2,158,072 + -1.1 2,158,073 - -1.1 2,158,073 - -0.1 2,158,082 + -0.1 2,158,082 + -0.1 2,158,082 + -0.1 2,158,083 - -0.1 2,158,083 - -0.8 2,158,750 + -0.1 2,158,750 + -0.1 2,158,751 - -0.1 2,158,751 - -0.1 2,158,751 - -0.1 2,158,754 + -0.1 2,158,754 + -1.1 2,158,795 - -0.1 2,158,795 - -0.1 2,158,805 + -0.1 2,159,059 - -1.1 2,159,059 - -0.8 2,159,059 - -0.1 2,159,059 - -0.1
Or see this region's nucleotide sequence