Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1859

Experiment: L-Malic Acid (C) and N2; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1857 and Rru_A1858 are separated by 112 nucleotidesRru_A1858 and Rru_A1859 are separated by 144 nucleotidesRru_A1859 and Rru_A1860 are separated by 27 nucleotidesRru_A1860 and Rru_A1861 are separated by 237 nucleotides Rru_A1857: Rru_A1857 - RNA polymerase, omega subunit (NCBI), at 2,156,281 to 2,156,697 _A1857 Rru_A1858: Rru_A1858 - 7, 8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK (NCBI), at 2,156,810 to 2,157,295 _A1858 Rru_A1859: Rru_A1859 - Protein of unknown function DUF88 (NCBI), at 2,157,440 to 2,158,084 _A1859 Rru_A1860: Rru_A1860 - Uracil-DNA glycosylase superfamily (NCBI), at 2,158,112 to 2,158,756 _A1860 Rru_A1861: Rru_A1861 - hypothetical protein (NCBI), at 2,158,994 to 2,159,905 _A1861 Position (kb) 2157 2158 2159Strain fitness (log2 ratio) -2 -1 0 1at 2156.811 kb on + strandat 2157.347 kb on - strandat 2157.350 kb on + strandat 2157.377 kb on - strandat 2157.661 kb on + strand, within Rru_A1859at 2158.070 kb on + strandat 2158.070 kb on + strandat 2158.070 kb on + strandat 2158.070 kb on + strandat 2158.070 kb on + strandat 2158.071 kb on - strandat 2158.072 kb on + strandat 2158.073 kb on - strandat 2158.073 kb on - strandat 2158.082 kb on + strandat 2158.082 kb on + strandat 2158.082 kb on + strandat 2158.083 kb on - strandat 2158.083 kb on - strandat 2158.750 kb on + strandat 2158.750 kb on + strandat 2158.751 kb on - strandat 2158.751 kb on - strandat 2158.751 kb on - strandat 2158.754 kb on + strandat 2158.754 kb on + strandat 2158.795 kb on - strandat 2158.795 kb on - strandat 2158.805 kb on + strandat 2159.059 kb on - strandat 2159.059 kb on - strandat 2159.059 kb on - strandat 2159.059 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
remove
2,156,811 + -0.1
2,157,347 - -0.5
2,157,350 + -0.1
2,157,377 - -0.1
2,157,661 + Rru_A1859 0.34 -2.3
2,158,070 + -0.1
2,158,070 + -0.3
2,158,070 + -1.0
2,158,070 + -0.1
2,158,070 + -0.1
2,158,071 - -0.8
2,158,072 + -1.1
2,158,073 - -1.1
2,158,073 - -0.1
2,158,082 + -0.1
2,158,082 + -0.1
2,158,082 + -0.1
2,158,083 - -0.1
2,158,083 - -0.8
2,158,750 + -0.1
2,158,750 + -0.1
2,158,751 - -0.1
2,158,751 - -0.1
2,158,751 - -0.1
2,158,754 + -0.1
2,158,754 + -1.1
2,158,795 - -0.1
2,158,795 - -0.1
2,158,805 + -0.1
2,159,059 - -1.1
2,159,059 - -0.8
2,159,059 - -0.1
2,159,059 - -0.1

Or see this region's nucleotide sequence