Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1672

Experiment: L-Malic Acid (C) and N2; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1671 and Rru_A1672 overlap by 20 nucleotidesRru_A1672 and Rru_A1673 are separated by 44 nucleotidesRru_A1673 and Rru_A1674 are separated by 24 nucleotides Rru_A1671: Rru_A1671 - hypothetical protein (NCBI), at 1,961,364 to 1,962,509 _A1671 Rru_A1672: Rru_A1672 - hypothetical protein (NCBI), at 1,962,490 to 1,962,810 _A1672 Rru_A1673: Rru_A1673 - CutA1 divalent ion tolerance protein (NCBI), at 1,962,855 to 1,963,220 _A1673 Rru_A1674: Rru_A1674 - bifunctional enzyme, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, 4-diphosphocytidyl-2C- methyl-D-erythritol synthase (NCBI), at 1,963,245 to 1,964,399 _A1674 Position (kb) 1962 1963Strain fitness (log2 ratio) -1 0 1at 1961.724 kb on + strand, within Rru_A1671at 1961.725 kb on - strand, within Rru_A1671at 1961.725 kb on - strand, within Rru_A1671at 1961.806 kb on - strand, within Rru_A1671at 1962.099 kb on + strand, within Rru_A1671at 1962.100 kb on - strand, within Rru_A1671at 1962.252 kb on + strand, within Rru_A1671at 1962.252 kb on + strand, within Rru_A1671at 1962.252 kb on + strand, within Rru_A1671at 1962.252 kb on + strand, within Rru_A1671at 1962.252 kb on + strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.919 kb on - strand, within Rru_A1673at 1962.919 kb on - strand, within Rru_A1673at 1962.921 kb on - strand, within Rru_A1673at 1962.921 kb on - strand, within Rru_A1673at 1963.023 kb on + strand, within Rru_A1673at 1963.023 kb on + strand, within Rru_A1673at 1963.023 kb on + strand, within Rru_A1673at 1963.024 kb on - strand, within Rru_A1673at 1963.024 kb on - strand, within Rru_A1673at 1963.024 kb on - strand, within Rru_A1673at 1963.131 kb on + strand, within Rru_A1673at 1963.131 kb on + strand, within Rru_A1673at 1963.132 kb on - strand, within Rru_A1673at 1963.132 kb on - strand, within Rru_A1673at 1963.132 kb on - strand, within Rru_A1673at 1963.138 kb on + strand, within Rru_A1673at 1963.139 kb on - strand, within Rru_A1673

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
remove
1,961,724 + Rru_A1671 0.31 -1.1
1,961,725 - Rru_A1671 0.32 -0.1
1,961,725 - Rru_A1671 0.32 -0.1
1,961,806 - Rru_A1671 0.39 -1.3
1,962,099 + Rru_A1671 0.64 -0.1
1,962,100 - Rru_A1671 0.64 -0.1
1,962,252 + Rru_A1671 0.77 -0.1
1,962,252 + Rru_A1671 0.77 -0.1
1,962,252 + Rru_A1671 0.77 -0.1
1,962,252 + Rru_A1671 0.77 -0.1
1,962,252 + Rru_A1671 0.77 +0.2
1,962,253 - Rru_A1671 0.78 -1.0
1,962,253 - Rru_A1671 0.78 -0.1
1,962,253 - Rru_A1671 0.78 -0.1
1,962,253 - Rru_A1671 0.78 -0.6
1,962,253 - Rru_A1671 0.78 -0.1
1,962,253 - Rru_A1671 0.78 -0.1
1,962,253 - Rru_A1671 0.78 -1.0
1,962,253 - Rru_A1671 0.78 -0.1
1,962,918 + Rru_A1673 0.17 -0.1
1,962,918 + Rru_A1673 0.17 -0.1
1,962,918 + Rru_A1673 0.17 -1.7
1,962,918 + Rru_A1673 0.17 -0.1
1,962,918 + Rru_A1673 0.17 -0.1
1,962,918 + Rru_A1673 0.17 -0.7
1,962,918 + Rru_A1673 0.17 -0.1
1,962,918 + Rru_A1673 0.17 -0.1
1,962,919 - Rru_A1673 0.17 -0.1
1,962,919 - Rru_A1673 0.17 -0.1
1,962,921 - Rru_A1673 0.18 -0.1
1,962,921 - Rru_A1673 0.18 -0.7
1,963,023 + Rru_A1673 0.46 -0.1
1,963,023 + Rru_A1673 0.46 -0.1
1,963,023 + Rru_A1673 0.46 -0.1
1,963,024 - Rru_A1673 0.46 -0.1
1,963,024 - Rru_A1673 0.46 -0.1
1,963,024 - Rru_A1673 0.46 -1.1
1,963,131 + Rru_A1673 0.75 -0.1
1,963,131 + Rru_A1673 0.75 -0.1
1,963,132 - Rru_A1673 0.76 -1.7
1,963,132 - Rru_A1673 0.76 -0.1
1,963,132 - Rru_A1673 0.76 -0.1
1,963,138 + Rru_A1673 0.77 -0.7
1,963,139 - Rru_A1673 0.78 -0.1

Or see this region's nucleotide sequence