Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1253

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1252 and Rru_A1253 are separated by 110 nucleotidesRru_A1253 and Rru_A1254 overlap by 4 nucleotides Rru_A1252: Rru_A1252 - Glutamate--ammonia ligase (NCBI), at 1,472,361 to 1,473,713 _A1252 Rru_A1253: Rru_A1253 - Glutamine synthetase, catalytic region (NCBI), at 1,473,824 to 1,475,188 _A1253 Rru_A1254: Rru_A1254 - Aminotransferase class-III (NCBI), at 1,475,185 to 1,476,579 _A1254 Position (kb) 1473 1474 1475 1476Strain fitness (log2 ratio) -1 0 1at 1472.849 kb on + strand, within Rru_A1252at 1472.849 kb on + strand, within Rru_A1252at 1472.849 kb on + strand, within Rru_A1252at 1472.850 kb on - strand, within Rru_A1252at 1472.850 kb on - strand, within Rru_A1252at 1472.850 kb on - strand, within Rru_A1252at 1472.851 kb on + strand, within Rru_A1252at 1472.852 kb on - strand, within Rru_A1252at 1472.852 kb on - strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.937 kb on - strand, within Rru_A1252at 1472.937 kb on - strand, within Rru_A1252at 1472.937 kb on - strand, within Rru_A1252at 1472.989 kb on + strand, within Rru_A1252at 1472.989 kb on + strand, within Rru_A1252at 1472.989 kb on + strand, within Rru_A1252at 1472.990 kb on - strand, within Rru_A1252at 1472.990 kb on - strand, within Rru_A1252at 1472.990 kb on - strand, within Rru_A1252at 1472.990 kb on - strand, within Rru_A1252at 1472.990 kb on - strand, within Rru_A1252at 1473.154 kb on + strand, within Rru_A1252at 1473.154 kb on + strand, within Rru_A1252at 1473.154 kb on + strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.159 kb on - strand, within Rru_A1252at 1473.159 kb on - strand, within Rru_A1252at 1473.159 kb on - strand, within Rru_A1252at 1473.159 kb on - strand, within Rru_A1252at 1473.202 kb on + strand, within Rru_A1252at 1473.202 kb on + strand, within Rru_A1252at 1473.202 kb on + strand, within Rru_A1252at 1473.203 kb on - strand, within Rru_A1252at 1473.203 kb on - strand, within Rru_A1252at 1473.289 kb on + strand, within Rru_A1252at 1473.290 kb on - strand, within Rru_A1252at 1473.337 kb on + strand, within Rru_A1252at 1473.337 kb on + strand, within Rru_A1252at 1473.401 kb on + strand, within Rru_A1252at 1473.402 kb on - strand, within Rru_A1252at 1473.402 kb on - strand, within Rru_A1252at 1473.402 kb on - strand, within Rru_A1252at 1473.403 kb on + strand, within Rru_A1252at 1473.404 kb on - strand, within Rru_A1252at 1473.456 kb on + strand, within Rru_A1252at 1473.456 kb on + strand, within Rru_A1252at 1473.456 kb on + strand, within Rru_A1252at 1473.456 kb on + strand, within Rru_A1252at 1473.457 kb on - strand, within Rru_A1252at 1473.457 kb on - strand, within Rru_A1252at 1473.457 kb on - strand, within Rru_A1252at 1473.722 kb on + strandat 1473.722 kb on + strandat 1473.730 kb on + strandat 1473.730 kb on + strandat 1473.805 kb on + strandat 1473.806 kb on - strandat 1473.831 kb on + strandat 1473.831 kb on + strandat 1473.900 kb on + strandat 1473.900 kb on + strandat 1473.901 kb on - strandat 1473.901 kb on - strandat 1473.977 kb on - strand, within Rru_A1253at 1473.977 kb on - strand, within Rru_A1253at 1473.977 kb on - strand, within Rru_A1253at 1473.977 kb on - strand, within Rru_A1253at 1473.977 kb on - strand, within Rru_A1253at 1474.054 kb on - strand, within Rru_A1253at 1474.207 kb on + strand, within Rru_A1253at 1474.208 kb on - strand, within Rru_A1253at 1474.405 kb on - strand, within Rru_A1253at 1474.530 kb on + strand, within Rru_A1253at 1474.530 kb on + strand, within Rru_A1253at 1474.530 kb on + strand, within Rru_A1253at 1474.531 kb on - strand, within Rru_A1253at 1474.531 kb on - strand, within Rru_A1253at 1474.639 kb on + strand, within Rru_A1253at 1474.639 kb on + strand, within Rru_A1253at 1474.639 kb on + strand, within Rru_A1253at 1474.728 kb on + strand, within Rru_A1253at 1474.728 kb on + strand, within Rru_A1253at 1474.728 kb on + strand, within Rru_A1253at 1474.728 kb on + strand, within Rru_A1253at 1474.729 kb on - strand, within Rru_A1253at 1474.729 kb on - strand, within Rru_A1253at 1474.729 kb on - strand, within Rru_A1253at 1474.729 kb on - strand, within Rru_A1253at 1474.729 kb on - strand, within Rru_A1253at 1474.729 kb on - strand, within Rru_A1253at 1475.064 kb on + strandat 1475.065 kb on - strandat 1475.065 kb on - strandat 1475.103 kb on + strandat 1475.103 kb on + strandat 1475.104 kb on - strandat 1475.104 kb on - strandat 1475.425 kb on + strand, within Rru_A1254at 1475.426 kb on - strand, within Rru_A1254at 1475.504 kb on + strand, within Rru_A1254at 1475.504 kb on + strand, within Rru_A1254at 1475.816 kb on + strand, within Rru_A1254at 1475.816 kb on + strand, within Rru_A1254at 1475.817 kb on - strand, within Rru_A1254at 1475.817 kb on - strand, within Rru_A1254at 1475.817 kb on - strand, within Rru_A1254at 1475.817 kb on - strand, within Rru_A1254at 1475.817 kb on - strand, within Rru_A1254at 1475.849 kb on + strand, within Rru_A1254at 1475.849 kb on + strand, within Rru_A1254at 1475.849 kb on + strand, within Rru_A1254at 1475.850 kb on - strand, within Rru_A1254at 1475.850 kb on - strand, within Rru_A1254at 1475.850 kb on - strand, within Rru_A1254at 1475.850 kb on - strand, within Rru_A1254at 1475.850 kb on - strand, within Rru_A1254at 1476.012 kb on - strand, within Rru_A1254at 1476.012 kb on - strand, within Rru_A1254at 1476.018 kb on - strand, within Rru_A1254at 1476.031 kb on - strand, within Rru_A1254at 1476.062 kb on + strand, within Rru_A1254at 1476.062 kb on + strand, within Rru_A1254at 1476.062 kb on + strand, within Rru_A1254at 1476.062 kb on + strand, within Rru_A1254at 1476.062 kb on + strand, within Rru_A1254at 1476.063 kb on - strand, within Rru_A1254at 1476.120 kb on - strand, within Rru_A1254

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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1,472,849 + Rru_A1252 0.36 -0.1
1,472,849 + Rru_A1252 0.36 -0.1
1,472,849 + Rru_A1252 0.36 -0.1
1,472,850 - Rru_A1252 0.36 -0.3
1,472,850 - Rru_A1252 0.36 -0.1
1,472,850 - Rru_A1252 0.36 -0.1
1,472,851 + Rru_A1252 0.36 -0.1
1,472,852 - Rru_A1252 0.36 -0.1
1,472,852 - Rru_A1252 0.36 -0.1
1,472,936 + Rru_A1252 0.42 -0.1
1,472,936 + Rru_A1252 0.42 -0.1
1,472,936 + Rru_A1252 0.42 -0.1
1,472,936 + Rru_A1252 0.42 -0.1
1,472,936 + Rru_A1252 0.42 -0.8
1,472,936 + Rru_A1252 0.42 -0.9
1,472,936 + Rru_A1252 0.42 -1.3
1,472,936 + Rru_A1252 0.42 -0.8
1,472,936 + Rru_A1252 0.42 +0.4
1,472,937 - Rru_A1252 0.43 -0.1
1,472,937 - Rru_A1252 0.43 -0.1
1,472,937 - Rru_A1252 0.43 +0.4
1,472,989 + Rru_A1252 0.46 -0.1
1,472,989 + Rru_A1252 0.46 -1.6
1,472,989 + Rru_A1252 0.46 -1.6
1,472,990 - Rru_A1252 0.46 -0.1
1,472,990 - Rru_A1252 0.46 -0.1
1,472,990 - Rru_A1252 0.46 -0.1
1,472,990 - Rru_A1252 0.46 -0.1
1,472,990 - Rru_A1252 0.46 -0.7
1,473,154 + Rru_A1252 0.59 -1.0
1,473,154 + Rru_A1252 0.59 -0.1
1,473,154 + Rru_A1252 0.59 -0.1
1,473,155 - Rru_A1252 0.59 -0.1
1,473,155 - Rru_A1252 0.59 -0.1
1,473,155 - Rru_A1252 0.59 -1.1
1,473,155 - Rru_A1252 0.59 -0.1
1,473,155 - Rru_A1252 0.59 -1.1
1,473,155 - Rru_A1252 0.59 -0.1
1,473,155 - Rru_A1252 0.59 -0.1
1,473,155 - Rru_A1252 0.59 -0.1
1,473,155 - Rru_A1252 0.59 -0.7
1,473,159 - Rru_A1252 0.59 -0.1
1,473,159 - Rru_A1252 0.59 -0.1
1,473,159 - Rru_A1252 0.59 -0.1
1,473,159 - Rru_A1252 0.59 -1.2
1,473,202 + Rru_A1252 0.62 -0.1
1,473,202 + Rru_A1252 0.62 -1.1
1,473,202 + Rru_A1252 0.62 -0.1
1,473,203 - Rru_A1252 0.62 -0.8
1,473,203 - Rru_A1252 0.62 -0.6
1,473,289 + Rru_A1252 0.69 -0.1
1,473,290 - Rru_A1252 0.69 -0.1
1,473,337 + Rru_A1252 0.72 -0.1
1,473,337 + Rru_A1252 0.72 -0.1
1,473,401 + Rru_A1252 0.77 -0.1
1,473,402 - Rru_A1252 0.77 -0.1
1,473,402 - Rru_A1252 0.77 -0.7
1,473,402 - Rru_A1252 0.77 -0.1
1,473,403 + Rru_A1252 0.77 -0.1
1,473,404 - Rru_A1252 0.77 -0.1
1,473,456 + Rru_A1252 0.81 -1.1
1,473,456 + Rru_A1252 0.81 -0.1
1,473,456 + Rru_A1252 0.81 -0.9
1,473,456 + Rru_A1252 0.81 -0.1
1,473,457 - Rru_A1252 0.81 -0.1
1,473,457 - Rru_A1252 0.81 -0.1
1,473,457 - Rru_A1252 0.81 -0.1
1,473,722 + -0.1
1,473,722 + -0.1
1,473,730 + -0.1
1,473,730 + -0.1
1,473,805 + -0.1
1,473,806 - -0.1
1,473,831 + -0.1
1,473,831 + -0.5
1,473,900 + -1.0
1,473,900 + -0.1
1,473,901 - -1.1
1,473,901 - -0.1
1,473,977 - Rru_A1253 0.11 -0.8
1,473,977 - Rru_A1253 0.11 -0.6
1,473,977 - Rru_A1253 0.11 -0.8
1,473,977 - Rru_A1253 0.11 -0.1
1,473,977 - Rru_A1253 0.11 -0.1
1,474,054 - Rru_A1253 0.17 -0.1
1,474,207 + Rru_A1253 0.28 -1.5
1,474,208 - Rru_A1253 0.28 -0.9
1,474,405 - Rru_A1253 0.43 -0.8
1,474,530 + Rru_A1253 0.52 -0.1
1,474,530 + Rru_A1253 0.52 -0.8
1,474,530 + Rru_A1253 0.52 +0.5
1,474,531 - Rru_A1253 0.52 -0.5
1,474,531 - Rru_A1253 0.52 -0.1
1,474,639 + Rru_A1253 0.60 -1.2
1,474,639 + Rru_A1253 0.60 -0.1
1,474,639 + Rru_A1253 0.60 -0.1
1,474,728 + Rru_A1253 0.66 -0.1
1,474,728 + Rru_A1253 0.66 -1.1
1,474,728 + Rru_A1253 0.66 -0.1
1,474,728 + Rru_A1253 0.66 -0.1
1,474,729 - Rru_A1253 0.66 -0.1
1,474,729 - Rru_A1253 0.66 -0.1
1,474,729 - Rru_A1253 0.66 -0.1
1,474,729 - Rru_A1253 0.66 -0.1
1,474,729 - Rru_A1253 0.66 -0.1
1,474,729 - Rru_A1253 0.66 -0.1
1,475,064 + -1.3
1,475,065 - -0.1
1,475,065 - -0.1
1,475,103 + -0.7
1,475,103 + -0.1
1,475,104 - -0.9
1,475,104 - -0.1
1,475,425 + Rru_A1254 0.17 -0.1
1,475,426 - Rru_A1254 0.17 -0.1
1,475,504 + Rru_A1254 0.23 -1.3
1,475,504 + Rru_A1254 0.23 -0.1
1,475,816 + Rru_A1254 0.45 -0.1
1,475,816 + Rru_A1254 0.45 -0.1
1,475,817 - Rru_A1254 0.45 -0.1
1,475,817 - Rru_A1254 0.45 -0.1
1,475,817 - Rru_A1254 0.45 +0.9
1,475,817 - Rru_A1254 0.45 -0.1
1,475,817 - Rru_A1254 0.45 -0.1
1,475,849 + Rru_A1254 0.48 -1.3
1,475,849 + Rru_A1254 0.48 -1.1
1,475,849 + Rru_A1254 0.48 -0.9
1,475,850 - Rru_A1254 0.48 -1.1
1,475,850 - Rru_A1254 0.48 -0.1
1,475,850 - Rru_A1254 0.48 -0.1
1,475,850 - Rru_A1254 0.48 -0.7
1,475,850 - Rru_A1254 0.48 -1.0
1,476,012 - Rru_A1254 0.59 -0.1
1,476,012 - Rru_A1254 0.59 -0.1
1,476,018 - Rru_A1254 0.60 -0.1
1,476,031 - Rru_A1254 0.61 -0.1
1,476,062 + Rru_A1254 0.63 -0.1
1,476,062 + Rru_A1254 0.63 -1.1
1,476,062 + Rru_A1254 0.63 -0.9
1,476,062 + Rru_A1254 0.63 -0.6
1,476,062 + Rru_A1254 0.63 -0.1
1,476,063 - Rru_A1254 0.63 -0.6
1,476,120 - Rru_A1254 0.67 -0.1

Or see this region's nucleotide sequence