Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1068 and Rru_A1069 are separated by 43 nucleotides Rru_A1069 and Rru_A1070 are separated by 103 nucleotides Rru_A1070 and Rru_A1071 are separated by 245 nucleotides
Rru_A1068: Rru_A1068 - Aminotransferase, class V (NCBI), at 1,258,016 to 1,259,197
_A1068
Rru_A1069: Rru_A1069 - Putative Fe-S cluster (NCBI), at 1,259,241 to 1,259,966
_A1069
Rru_A1070: Rru_A1070 - Heat shock protein Hsp20 (NCBI), at 1,260,070 to 1,260,540
_A1070
Rru_A1071: Rru_A1071 - Adenylate/Guanylate Cyclase (NCBI), at 1,260,786 to 1,262,828
_A1071
Position (kb) 1260
1261 Strain fitness (log2 ratio) -1
0
1 at 1259.217 kb on + strand at 1259.218 kb on - strand at 1259.218 kb on - strand at 1259.228 kb on + strand at 1259.229 kb on - strand at 1259.229 kb on - strand at 1259.229 kb on - strand at 1259.781 kb on + strand, within Rru_A1069 at 1259.781 kb on + strand, within Rru_A1069 at 1259.781 kb on + strand, within Rru_A1069 at 1259.784 kb on + strand, within Rru_A1069 at 1259.784 kb on + strand, within Rru_A1069 at 1259.784 kb on + strand, within Rru_A1069 at 1259.784 kb on + strand, within Rru_A1069 at 1259.784 kb on + strand, within Rru_A1069 at 1259.785 kb on - strand, within Rru_A1069 at 1259.785 kb on - strand, within Rru_A1069 at 1259.799 kb on + strand, within Rru_A1069 at 1259.853 kb on + strand, within Rru_A1069 at 1259.853 kb on + strand, within Rru_A1069 at 1259.853 kb on + strand, within Rru_A1069 at 1259.854 kb on - strand, within Rru_A1069 at 1259.907 kb on + strand at 1259.908 kb on - strand at 1259.978 kb on + strand at 1260.071 kb on + strand at 1260.175 kb on - strand, within Rru_A1070 at 1260.396 kb on - strand, within Rru_A1070 at 1260.423 kb on + strand, within Rru_A1070 at 1260.423 kb on + strand, within Rru_A1070 at 1260.423 kb on + strand, within Rru_A1070 at 1260.424 kb on - strand, within Rru_A1070 at 1260.424 kb on - strand, within Rru_A1070 at 1260.424 kb on - strand, within Rru_A1070 at 1260.424 kb on - strand, within Rru_A1070 at 1260.425 kb on + strand, within Rru_A1070 at 1260.425 kb on + strand, within Rru_A1070 at 1260.425 kb on + strand, within Rru_A1070 at 1260.426 kb on - strand, within Rru_A1070 at 1260.534 kb on + strand at 1260.534 kb on + strand at 1260.534 kb on + strand at 1260.535 kb on - strand at 1260.535 kb on - strand at 1260.546 kb on + strand at 1260.703 kb on + strand at 1261.045 kb on + strand, within Rru_A1071 at 1261.045 kb on + strand, within Rru_A1071 at 1261.046 kb on - strand, within Rru_A1071 at 1261.211 kb on + strand, within Rru_A1071 at 1261.212 kb on - strand, within Rru_A1071 at 1261.265 kb on + strand, within Rru_A1071 at 1261.316 kb on + strand, within Rru_A1071 at 1261.335 kb on - strand, within Rru_A1071 at 1261.341 kb on - strand, within Rru_A1071 at 1261.492 kb on + strand, within Rru_A1071 at 1261.492 kb on + strand, within Rru_A1071 at 1261.492 kb on + strand, within Rru_A1071 at 1261.492 kb on + strand, within Rru_A1071 at 1261.493 kb on - strand, within Rru_A1071 at 1261.493 kb on - strand, within Rru_A1071 at 1261.493 kb on - strand, within Rru_A1071 at 1261.493 kb on - strand, within Rru_A1071 at 1261.510 kb on + strand, within Rru_A1071 at 1261.510 kb on + strand, within Rru_A1071 at 1261.510 kb on + strand, within Rru_A1071 at 1261.511 kb on - strand, within Rru_A1071 at 1261.511 kb on - strand, within Rru_A1071
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 1,259,217 + -0.6 1,259,218 - -0.0 1,259,218 - -0.3 1,259,228 + -0.8 1,259,229 - -0.0 1,259,229 - -1.0 1,259,229 - -0.5 1,259,781 + Rru_A1069 0.74 -0.0 1,259,781 + Rru_A1069 0.74 -0.0 1,259,781 + Rru_A1069 0.74 -0.6 1,259,784 + Rru_A1069 0.75 -0.2 1,259,784 + Rru_A1069 0.75 -0.0 1,259,784 + Rru_A1069 0.75 -0.0 1,259,784 + Rru_A1069 0.75 -0.0 1,259,784 + Rru_A1069 0.75 -0.0 1,259,785 - Rru_A1069 0.75 -0.0 1,259,785 - Rru_A1069 0.75 -0.0 1,259,799 + Rru_A1069 0.77 -0.0 1,259,853 + Rru_A1069 0.84 -0.0 1,259,853 + Rru_A1069 0.84 -1.0 1,259,853 + Rru_A1069 0.84 -0.0 1,259,854 - Rru_A1069 0.84 +0.3 1,259,907 + -0.0 1,259,908 - -0.7 1,259,978 + -0.0 1,260,071 + -0.0 1,260,175 - Rru_A1070 0.22 -0.0 1,260,396 - Rru_A1070 0.69 -0.9 1,260,423 + Rru_A1070 0.75 -0.0 1,260,423 + Rru_A1070 0.75 -0.0 1,260,423 + Rru_A1070 0.75 -1.0 1,260,424 - Rru_A1070 0.75 -0.0 1,260,424 - Rru_A1070 0.75 -0.0 1,260,424 - Rru_A1070 0.75 -1.3 1,260,424 - Rru_A1070 0.75 -1.6 1,260,425 + Rru_A1070 0.75 -0.0 1,260,425 + Rru_A1070 0.75 -0.0 1,260,425 + Rru_A1070 0.75 -0.0 1,260,426 - Rru_A1070 0.76 -1.0 1,260,534 + -0.6 1,260,534 + -0.0 1,260,534 + -1.6 1,260,535 - -0.4 1,260,535 - -0.4 1,260,546 + -0.7 1,260,703 + -0.0 1,261,045 + Rru_A1071 0.13 -0.0 1,261,045 + Rru_A1071 0.13 -1.0 1,261,046 - Rru_A1071 0.13 -0.0 1,261,211 + Rru_A1071 0.21 +0.4 1,261,212 - Rru_A1071 0.21 -1.2 1,261,265 + Rru_A1071 0.23 -0.1 1,261,316 + Rru_A1071 0.26 -1.0 1,261,335 - Rru_A1071 0.27 -0.0 1,261,341 - Rru_A1071 0.27 -0.0 1,261,492 + Rru_A1071 0.35 -1.0 1,261,492 + Rru_A1071 0.35 -0.0 1,261,492 + Rru_A1071 0.35 -0.0 1,261,492 + Rru_A1071 0.35 -0.0 1,261,493 - Rru_A1071 0.35 -0.0 1,261,493 - Rru_A1071 0.35 -0.0 1,261,493 - Rru_A1071 0.35 -0.0 1,261,493 - Rru_A1071 0.35 -0.9 1,261,510 + Rru_A1071 0.35 -0.2 1,261,510 + Rru_A1071 0.35 -0.0 1,261,510 + Rru_A1071 0.35 -0.0 1,261,511 - Rru_A1071 0.35 -0.0 1,261,511 - Rru_A1071 0.35 -0.0
Or see this region's nucleotide sequence