Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1027 and Rru_A1028 are separated by 62 nucleotides Rru_A1028 and Rru_A1029 overlap by 4 nucleotides Rru_A1029 and Rru_A1030 are separated by 104 nucleotides
Rru_A1027: Rru_A1027 - (Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase (NCBI), at 1,215,225 to 1,217,558
_A1027
Rru_A1028: Rru_A1028 - hypothetical protein (NCBI), at 1,217,621 to 1,217,887
_A1028
Rru_A1029: Rru_A1029 - Transcriptional Regulator, AraC family (NCBI), at 1,217,884 to 1,218,939
_A1029
Rru_A1030: Rru_A1030 - Amino acid permease-associated region (NCBI), at 1,219,044 to 1,220,468
_A1030
Position (kb) 1217
1218
1219 Strain fitness (log2 ratio) -1
0
1 at 1217.192 kb on - strand, within Rru_A1027 at 1217.594 kb on + strand at 1217.595 kb on - strand at 1217.970 kb on - strand at 1218.020 kb on + strand, within Rru_A1029 at 1218.020 kb on + strand, within Rru_A1029 at 1218.020 kb on + strand, within Rru_A1029 at 1218.020 kb on + strand, within Rru_A1029 at 1218.021 kb on - strand, within Rru_A1029 at 1218.021 kb on - strand, within Rru_A1029 at 1218.516 kb on - strand, within Rru_A1029 at 1218.597 kb on + strand, within Rru_A1029 at 1218.685 kb on + strand, within Rru_A1029 at 1218.686 kb on - strand, within Rru_A1029 at 1218.686 kb on - strand, within Rru_A1029 at 1218.740 kb on + strand, within Rru_A1029 at 1218.740 kb on + strand, within Rru_A1029 at 1218.741 kb on - strand, within Rru_A1029 at 1218.741 kb on - strand, within Rru_A1029 at 1218.741 kb on - strand, within Rru_A1029 at 1218.930 kb on + strand at 1218.931 kb on - strand at 1218.931 kb on - strand at 1218.931 kb on - strand at 1219.006 kb on - strand at 1219.045 kb on + strand at 1219.046 kb on - strand at 1219.101 kb on + strand at 1219.150 kb on + strand at 1219.210 kb on + strand, within Rru_A1030 at 1219.210 kb on + strand, within Rru_A1030 at 1219.211 kb on - strand, within Rru_A1030 at 1219.348 kb on + strand, within Rru_A1030 at 1219.348 kb on + strand, within Rru_A1030 at 1219.348 kb on + strand, within Rru_A1030 at 1219.348 kb on + strand, within Rru_A1030 at 1219.348 kb on + strand, within Rru_A1030 at 1219.348 kb on + strand, within Rru_A1030 at 1219.349 kb on - strand, within Rru_A1030 at 1219.385 kb on + strand, within Rru_A1030 at 1219.385 kb on + strand, within Rru_A1030 at 1219.386 kb on - strand, within Rru_A1030 at 1219.561 kb on + strand, within Rru_A1030 at 1219.561 kb on + strand, within Rru_A1030 at 1219.562 kb on - strand, within Rru_A1030 at 1219.562 kb on - strand, within Rru_A1030 at 1219.774 kb on + strand, within Rru_A1030 at 1219.774 kb on + strand, within Rru_A1030 at 1219.774 kb on + strand, within Rru_A1030 at 1219.774 kb on + strand, within Rru_A1030 at 1219.774 kb on + strand, within Rru_A1030 at 1219.775 kb on - strand, within Rru_A1030 at 1219.775 kb on - strand, within Rru_A1030 at 1219.775 kb on - strand, within Rru_A1030 at 1219.775 kb on - strand, within Rru_A1030
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 1,217,192 - Rru_A1027 0.84 -1.6 1,217,594 + +0.0 1,217,595 - +0.0 1,217,970 - -1.0 1,218,020 + Rru_A1029 0.13 +0.0 1,218,020 + Rru_A1029 0.13 +0.0 1,218,020 + Rru_A1029 0.13 +0.0 1,218,020 + Rru_A1029 0.13 +0.0 1,218,021 - Rru_A1029 0.13 +0.0 1,218,021 - Rru_A1029 0.13 -1.1 1,218,516 - Rru_A1029 0.60 +0.0 1,218,597 + Rru_A1029 0.68 +0.0 1,218,685 + Rru_A1029 0.76 -1.0 1,218,686 - Rru_A1029 0.76 +0.0 1,218,686 - Rru_A1029 0.76 +0.0 1,218,740 + Rru_A1029 0.81 +0.0 1,218,740 + Rru_A1029 0.81 +0.0 1,218,741 - Rru_A1029 0.81 -0.9 1,218,741 - Rru_A1029 0.81 +0.0 1,218,741 - Rru_A1029 0.81 -0.1 1,218,930 + +0.0 1,218,931 - +0.0 1,218,931 - -1.1 1,218,931 - +0.0 1,219,006 - +0.0 1,219,045 + -1.3 1,219,046 - -1.6 1,219,101 + +0.0 1,219,150 + +0.0 1,219,210 + Rru_A1030 0.12 -1.0 1,219,210 + Rru_A1030 0.12 +0.0 1,219,211 - Rru_A1030 0.12 -1.3 1,219,348 + Rru_A1030 0.21 -1.0 1,219,348 + Rru_A1030 0.21 +0.0 1,219,348 + Rru_A1030 0.21 -1.0 1,219,348 + Rru_A1030 0.21 +0.0 1,219,348 + Rru_A1030 0.21 -1.6 1,219,348 + Rru_A1030 0.21 -1.2 1,219,349 - Rru_A1030 0.21 +0.0 1,219,385 + Rru_A1030 0.24 -0.8 1,219,385 + Rru_A1030 0.24 -1.2 1,219,386 - Rru_A1030 0.24 +0.0 1,219,561 + Rru_A1030 0.36 +0.0 1,219,561 + Rru_A1030 0.36 +0.0 1,219,562 - Rru_A1030 0.36 -1.6 1,219,562 - Rru_A1030 0.36 +0.0 1,219,774 + Rru_A1030 0.51 +0.0 1,219,774 + Rru_A1030 0.51 +0.0 1,219,774 + Rru_A1030 0.51 +0.0 1,219,774 + Rru_A1030 0.51 -0.7 1,219,774 + Rru_A1030 0.51 +0.0 1,219,775 - Rru_A1030 0.51 +0.0 1,219,775 - Rru_A1030 0.51 +0.0 1,219,775 - Rru_A1030 0.51 +0.0 1,219,775 - Rru_A1030 0.51 +0.0
Or see this region's nucleotide sequence