Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0978

Experiment: L-Malic Acid (C) and N2; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0976 and Rru_A0977 overlap by 4 nucleotidesRru_A0977 and Rru_A0978 are separated by 358 nucleotidesRru_A0978 and Rru_A0979 are separated by 96 nucleotides Rru_A0976: Rru_A0976 - Transcriptional modulator of MazE/toxin, MazF (NCBI), at 1,162,666 to 1,162,995 _A0976 Rru_A0977: Rru_A0977 - hypothetical protein (NCBI), at 1,162,992 to 1,163,294 _A0977 Rru_A0978: Rru_A0978 - Transcriptional Regulator, MarR family (NCBI), at 1,163,653 to 1,164,162 _A0978 Rru_A0979: Rru_A0979 - extracellular solute-binding protein, family 5 (NCBI), at 1,164,259 to 1,165,851 _A0979 Position (kb) 1163 1164 1165Strain fitness (log2 ratio) -2 -1 0 1at 1162.717 kb on + strand, within Rru_A0976at 1162.717 kb on + strand, within Rru_A0976at 1162.718 kb on - strand, within Rru_A0976at 1162.718 kb on - strand, within Rru_A0976at 1162.875 kb on + strand, within Rru_A0976at 1162.952 kb on + strand, within Rru_A0976at 1163.155 kb on + strand, within Rru_A0977at 1163.156 kb on - strand, within Rru_A0977at 1163.156 kb on - strand, within Rru_A0977at 1163.318 kb on - strandat 1163.318 kb on - strandat 1163.401 kb on + strandat 1163.713 kb on + strand, within Rru_A0978at 1163.713 kb on + strand, within Rru_A0978at 1163.714 kb on - strand, within Rru_A0978at 1163.714 kb on - strand, within Rru_A0978at 1163.714 kb on - strand, within Rru_A0978at 1163.714 kb on - strand, within Rru_A0978at 1163.714 kb on - strand, within Rru_A0978at 1163.773 kb on + strand, within Rru_A0978at 1163.872 kb on + strand, within Rru_A0978at 1163.873 kb on - strand, within Rru_A0978at 1164.218 kb on + strandat 1164.219 kb on - strandat 1164.219 kb on - strandat 1164.253 kb on - strandat 1164.253 kb on - strandat 1164.253 kb on - strandat 1164.267 kb on + strandat 1164.267 kb on + strandat 1164.267 kb on + strandat 1164.274 kb on - strandat 1164.442 kb on + strand, within Rru_A0979at 1164.442 kb on + strand, within Rru_A0979at 1164.442 kb on + strand, within Rru_A0979at 1164.442 kb on + strand, within Rru_A0979at 1164.443 kb on - strand, within Rru_A0979at 1164.443 kb on - strand, within Rru_A0979at 1164.444 kb on + strand, within Rru_A0979at 1164.444 kb on + strand, within Rru_A0979at 1164.444 kb on + strand, within Rru_A0979at 1164.444 kb on + strand, within Rru_A0979at 1164.445 kb on - strand, within Rru_A0979at 1164.445 kb on - strand, within Rru_A0979at 1164.445 kb on - strand, within Rru_A0979at 1164.445 kb on - strand, within Rru_A0979at 1164.445 kb on - strand, within Rru_A0979at 1164.512 kb on - strand, within Rru_A0979at 1164.512 kb on - strand, within Rru_A0979at 1164.512 kb on - strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.842 kb on - strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.844 kb on - strand, within Rru_A0979at 1164.844 kb on - strand, within Rru_A0979at 1164.904 kb on + strand, within Rru_A0979at 1164.904 kb on + strand, within Rru_A0979at 1164.904 kb on + strand, within Rru_A0979at 1164.904 kb on + strand, within Rru_A0979at 1164.905 kb on - strand, within Rru_A0979at 1164.955 kb on + strand, within Rru_A0979at 1164.956 kb on - strand, within Rru_A0979at 1164.956 kb on - strand, within Rru_A0979at 1165.060 kb on + strand, within Rru_A0979at 1165.061 kb on - strand, within Rru_A0979at 1165.061 kb on - strand, within Rru_A0979at 1165.061 kb on - strand, within Rru_A0979

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
remove
1,162,717 + Rru_A0976 0.15 +0.0
1,162,717 + Rru_A0976 0.15 -1.1
1,162,718 - Rru_A0976 0.16 +0.0
1,162,718 - Rru_A0976 0.16 +0.0
1,162,875 + Rru_A0976 0.63 +0.0
1,162,952 + Rru_A0976 0.87 +0.0
1,163,155 + Rru_A0977 0.54 -1.0
1,163,156 - Rru_A0977 0.54 +0.0
1,163,156 - Rru_A0977 0.54 +0.0
1,163,318 - +0.0
1,163,318 - -0.8
1,163,401 + -0.8
1,163,713 + Rru_A0978 0.12 -2.2
1,163,713 + Rru_A0978 0.12 +0.0
1,163,714 - Rru_A0978 0.12 +0.0
1,163,714 - Rru_A0978 0.12 +0.0
1,163,714 - Rru_A0978 0.12 +0.0
1,163,714 - Rru_A0978 0.12 +0.0
1,163,714 - Rru_A0978 0.12 +0.0
1,163,773 + Rru_A0978 0.24 +0.0
1,163,872 + Rru_A0978 0.43 +0.0
1,163,873 - Rru_A0978 0.43 +0.0
1,164,218 + +0.0
1,164,219 - +0.0
1,164,219 - +0.0
1,164,253 - -1.3
1,164,253 - -1.3
1,164,253 - -1.3
1,164,267 + +0.0
1,164,267 + +0.0
1,164,267 + +0.0
1,164,274 - +0.0
1,164,442 + Rru_A0979 0.11 +0.0
1,164,442 + Rru_A0979 0.11 -1.0
1,164,442 + Rru_A0979 0.11 -2.0
1,164,442 + Rru_A0979 0.11 -0.6
1,164,443 - Rru_A0979 0.12 +0.0
1,164,443 - Rru_A0979 0.12 -0.9
1,164,444 + Rru_A0979 0.12 +0.0
1,164,444 + Rru_A0979 0.12 +0.0
1,164,444 + Rru_A0979 0.12 +0.0
1,164,444 + Rru_A0979 0.12 -1.3
1,164,445 - Rru_A0979 0.12 +0.0
1,164,445 - Rru_A0979 0.12 +0.0
1,164,445 - Rru_A0979 0.12 +0.0
1,164,445 - Rru_A0979 0.12 +0.0
1,164,445 - Rru_A0979 0.12 -1.1
1,164,512 - Rru_A0979 0.16 +0.0
1,164,512 - Rru_A0979 0.16 -1.3
1,164,512 - Rru_A0979 0.16 +0.0
1,164,841 + Rru_A0979 0.37 +0.0
1,164,841 + Rru_A0979 0.37 -1.1
1,164,841 + Rru_A0979 0.37 +0.0
1,164,841 + Rru_A0979 0.37 +0.0
1,164,841 + Rru_A0979 0.37 -0.9
1,164,841 + Rru_A0979 0.37 +0.0
1,164,842 - Rru_A0979 0.37 -1.0
1,164,843 + Rru_A0979 0.37 +0.0
1,164,843 + Rru_A0979 0.37 +0.0
1,164,843 + Rru_A0979 0.37 +0.0
1,164,843 + Rru_A0979 0.37 -2.0
1,164,843 + Rru_A0979 0.37 -0.8
1,164,843 + Rru_A0979 0.37 +0.0
1,164,844 - Rru_A0979 0.37 -0.9
1,164,844 - Rru_A0979 0.37 +0.0
1,164,904 + Rru_A0979 0.40 -1.0
1,164,904 + Rru_A0979 0.40 +0.0
1,164,904 + Rru_A0979 0.40 +0.0
1,164,904 + Rru_A0979 0.40 +0.0
1,164,905 - Rru_A0979 0.41 +0.0
1,164,955 + Rru_A0979 0.44 -1.1
1,164,956 - Rru_A0979 0.44 +0.0
1,164,956 - Rru_A0979 0.44 -1.2
1,165,060 + Rru_A0979 0.50 +0.0
1,165,061 - Rru_A0979 0.50 -0.7
1,165,061 - Rru_A0979 0.50 -1.0
1,165,061 - Rru_A0979 0.50 -1.2

Or see this region's nucleotide sequence