Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0960 and Rru_A0961 are separated by 6 nucleotides Rru_A0961 and Rru_A0962 are separated by 208 nucleotides Rru_A0962 and Rru_A0963 are separated by 53 nucleotides Rru_A0963 and Rru_A0964 overlap by 4 nucleotides
Rru_A0960: Rru_A0960 - AmpD (negative regulator of AmpC) (NCBI), at 1,145,882 to 1,146,607
_A0960
Rru_A0961: Rru_A0961 - hypothetical protein (NCBI), at 1,146,614 to 1,147,387
_A0961
Rru_A0962: Rru_A0962 - GCN5-related N-acetyltransferase (NCBI), at 1,147,596 to 1,148,090
_A0962
Rru_A0963: Rru_A0963 - MifU-like protein, Fe-S cluster formation (NCBI), at 1,148,144 to 1,148,602
_A0963
Rru_A0964: Rru_A0964 - Protein of unknown function DUF182 (NCBI), at 1,148,599 to 1,148,955
_A0964
Position (kb) 1147
1148
1149 Strain fitness (log2 ratio) -1
0
1 at 1146.648 kb on + strand at 1146.649 kb on - strand at 1147.017 kb on + strand, within Rru_A0961 at 1147.017 kb on + strand, within Rru_A0961 at 1147.017 kb on + strand, within Rru_A0961 at 1147.241 kb on + strand, within Rru_A0961 at 1147.241 kb on + strand, within Rru_A0961 at 1147.242 kb on - strand, within Rru_A0961 at 1147.293 kb on + strand, within Rru_A0961 at 1147.293 kb on + strand, within Rru_A0961 at 1147.293 kb on + strand, within Rru_A0961 at 1147.294 kb on - strand, within Rru_A0961 at 1147.387 kb on + strand at 1147.388 kb on - strand at 1147.523 kb on - strand at 1147.669 kb on + strand, within Rru_A0962 at 1147.697 kb on + strand, within Rru_A0962 at 1147.698 kb on - strand, within Rru_A0962 at 1147.708 kb on - strand, within Rru_A0962 at 1147.737 kb on + strand, within Rru_A0962 at 1147.890 kb on - strand, within Rru_A0962 at 1148.169 kb on - strand at 1148.354 kb on + strand, within Rru_A0963 at 1148.454 kb on - strand, within Rru_A0963 at 1148.454 kb on - strand, within Rru_A0963 at 1148.979 kb on + strand at 1149.035 kb on - strand at 1149.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 1,146,648 + +0.0 1,146,649 - +0.0 1,147,017 + Rru_A0961 0.52 +0.0 1,147,017 + Rru_A0961 0.52 -0.9 1,147,017 + Rru_A0961 0.52 +0.0 1,147,241 + Rru_A0961 0.81 -1.0 1,147,241 + Rru_A0961 0.81 -1.0 1,147,242 - Rru_A0961 0.81 -1.1 1,147,293 + Rru_A0961 0.88 +0.0 1,147,293 + Rru_A0961 0.88 +0.0 1,147,293 + Rru_A0961 0.88 -0.3 1,147,294 - Rru_A0961 0.88 -1.1 1,147,387 + -1.0 1,147,388 - +0.0 1,147,523 - -1.0 1,147,669 + Rru_A0962 0.15 +0.0 1,147,697 + Rru_A0962 0.20 +0.0 1,147,698 - Rru_A0962 0.21 -0.8 1,147,708 - Rru_A0962 0.23 -0.6 1,147,737 + Rru_A0962 0.28 +0.0 1,147,890 - Rru_A0962 0.59 +0.0 1,148,169 - -0.5 1,148,354 + Rru_A0963 0.46 +0.0 1,148,454 - Rru_A0963 0.68 +0.0 1,148,454 - Rru_A0963 0.68 -0.8 1,148,979 + +0.0 1,149,035 - +0.0 1,149,035 - +0.0
Or see this region's nucleotide sequence