Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0781

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0780 and Rru_A0781 overlap by 4 nucleotidesRru_A0781 and Rru_A0782 are separated by 137 nucleotidesRru_A0782 and Rru_A0783 are separated by 7 nucleotides Rru_A0780: Rru_A0780 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 932,148 to 933,311 _A0780 Rru_A0781: Rru_A0781 - Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI), at 933,308 to 934,411 _A0781 Rru_A0782: Rru_A0782 - hypothetical protein (NCBI), at 934,549 to 934,887 _A0782 Rru_A0783: Rru_A0783 - hypothetical protein (NCBI), at 934,895 to 935,452 _A0783 Position (kb) 933 934 935Strain fitness (log2 ratio) -2 -1 0 1at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.362 kb on - strand, within Rru_A0780at 932.362 kb on - strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.380 kb on - strand, within Rru_A0780at 932.520 kb on + strand, within Rru_A0780at 932.520 kb on + strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.541 kb on - strand, within Rru_A0780at 932.652 kb on + strand, within Rru_A0780at 932.652 kb on + strand, within Rru_A0780at 932.652 kb on + strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 933.111 kb on + strand, within Rru_A0780at 933.183 kb on - strand, within Rru_A0780at 933.183 kb on - strand, within Rru_A0780at 933.241 kb on - strandat 933.241 kb on - strandat 933.364 kb on + strandat 933.421 kb on + strand, within Rru_A0781at 933.421 kb on + strand, within Rru_A0781at 933.421 kb on + strand, within Rru_A0781at 933.421 kb on + strand, within Rru_A0781at 933.421 kb on + strand, within Rru_A0781at 933.422 kb on - strand, within Rru_A0781at 933.422 kb on - strand, within Rru_A0781at 933.422 kb on - strand, within Rru_A0781at 933.422 kb on - strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.945 kb on - strand, within Rru_A0781at 933.945 kb on - strand, within Rru_A0781at 934.044 kb on - strand, within Rru_A0781at 934.044 kb on - strand, within Rru_A0781at 934.094 kb on + strand, within Rru_A0781at 934.094 kb on + strand, within Rru_A0781at 934.095 kb on - strand, within Rru_A0781at 934.095 kb on - strand, within Rru_A0781at 934.125 kb on - strand, within Rru_A0781at 934.302 kb on - strandat 934.302 kb on - strandat 934.332 kb on + strandat 934.333 kb on - strandat 934.334 kb on + strandat 934.334 kb on + strandat 934.334 kb on + strandat 934.334 kb on + strandat 934.335 kb on - strandat 934.335 kb on - strandat 934.335 kb on - strandat 934.364 kb on + strandat 934.385 kb on + strandat 934.407 kb on - strandat 934.407 kb on - strandat 934.439 kb on + strandat 934.440 kb on - strandat 934.440 kb on - strandat 934.440 kb on - strandat 934.462 kb on - strandat 934.510 kb on + strandat 934.511 kb on - strandat 934.718 kb on - strand, within Rru_A0782at 934.880 kb on - strandat 934.880 kb on - strandat 935.060 kb on + strand, within Rru_A0783at 935.060 kb on + strand, within Rru_A0783at 935.060 kb on + strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.062 kb on + strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.110 kb on - strand, within Rru_A0783at 935.151 kb on + strand, within Rru_A0783at 935.237 kb on + strand, within Rru_A0783at 935.238 kb on - strand, within Rru_A0783at 935.269 kb on + strand, within Rru_A0783

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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932,361 + Rru_A0780 0.18 -0.8
932,361 + Rru_A0780 0.18 +0.0
932,361 + Rru_A0780 0.18 +0.0
932,361 + Rru_A0780 0.18 -1.0
932,361 + Rru_A0780 0.18 +0.0
932,362 - Rru_A0780 0.18 +0.0
932,362 - Rru_A0780 0.18 -0.4
932,363 + Rru_A0780 0.18 +0.0
932,363 + Rru_A0780 0.18 +0.0
932,363 + Rru_A0780 0.18 +0.0
932,363 + Rru_A0780 0.18 +0.0
932,363 + Rru_A0780 0.18 +0.0
932,364 - Rru_A0780 0.19 +0.0
932,364 - Rru_A0780 0.19 +0.0
932,364 - Rru_A0780 0.19 +0.0
932,364 - Rru_A0780 0.19 +0.0
932,379 + Rru_A0780 0.20 +0.0
932,379 + Rru_A0780 0.20 +0.0
932,379 + Rru_A0780 0.20 -1.1
932,379 + Rru_A0780 0.20 +0.0
932,380 - Rru_A0780 0.20 +0.0
932,520 + Rru_A0780 0.32 +0.0
932,520 + Rru_A0780 0.32 +0.0
932,521 - Rru_A0780 0.32 +0.0
932,521 - Rru_A0780 0.32 +0.0
932,521 - Rru_A0780 0.32 +0.0
932,521 - Rru_A0780 0.32 +0.0
932,541 - Rru_A0780 0.34 +0.0
932,652 + Rru_A0780 0.43 +0.0
932,652 + Rru_A0780 0.43 +0.6
932,652 + Rru_A0780 0.43 +0.0
932,653 - Rru_A0780 0.43 +0.0
932,653 - Rru_A0780 0.43 +0.0
932,653 - Rru_A0780 0.43 +0.0
932,653 - Rru_A0780 0.43 -0.9
932,654 + Rru_A0780 0.43 +0.0
932,654 + Rru_A0780 0.43 +0.0
932,654 + Rru_A0780 0.43 +0.0
932,654 + Rru_A0780 0.43 +0.0
933,111 + Rru_A0780 0.83 +0.0
933,183 - Rru_A0780 0.89 +0.0
933,183 - Rru_A0780 0.89 -0.7
933,241 - +0.0
933,241 - +0.0
933,364 + -0.9
933,421 + Rru_A0781 0.10 +0.0
933,421 + Rru_A0781 0.10 -0.9
933,421 + Rru_A0781 0.10 -1.2
933,421 + Rru_A0781 0.10 -1.1
933,421 + Rru_A0781 0.10 +0.0
933,422 - Rru_A0781 0.10 +0.0
933,422 - Rru_A0781 0.10 +0.0
933,422 - Rru_A0781 0.10 +0.0
933,422 - Rru_A0781 0.10 +0.0
933,944 + Rru_A0781 0.58 +0.0
933,944 + Rru_A0781 0.58 -0.9
933,944 + Rru_A0781 0.58 +0.0
933,944 + Rru_A0781 0.58 +0.0
933,945 - Rru_A0781 0.58 +0.0
933,945 - Rru_A0781 0.58 +0.0
934,044 - Rru_A0781 0.67 +0.0
934,044 - Rru_A0781 0.67 +0.0
934,094 + Rru_A0781 0.71 -0.9
934,094 + Rru_A0781 0.71 +0.0
934,095 - Rru_A0781 0.71 -0.9
934,095 - Rru_A0781 0.71 +0.0
934,125 - Rru_A0781 0.74 +0.0
934,302 - +0.0
934,302 - -1.6
934,332 + +0.0
934,333 - +0.0
934,334 + +0.0
934,334 + +0.0
934,334 + -0.8
934,334 + +0.0
934,335 - +0.0
934,335 - -1.1
934,335 - +0.0
934,364 + -1.1
934,385 + +0.0
934,407 - +0.0
934,407 - -0.6
934,439 + -1.0
934,440 - +0.0
934,440 - +0.0
934,440 - +0.0
934,462 - +0.0
934,510 + +0.0
934,511 - +0.0
934,718 - Rru_A0782 0.50 -1.0
934,880 - +0.0
934,880 - +0.0
935,060 + Rru_A0783 0.30 +0.0
935,060 + Rru_A0783 0.30 +0.0
935,060 + Rru_A0783 0.30 +0.0
935,061 - Rru_A0783 0.30 -2.0
935,061 - Rru_A0783 0.30 +0.0
935,061 - Rru_A0783 0.30 -0.8
935,062 + Rru_A0783 0.30 +1.0
935,063 - Rru_A0783 0.30 +0.0
935,063 - Rru_A0783 0.30 +0.0
935,063 - Rru_A0783 0.30 +0.0
935,063 - Rru_A0783 0.30 -1.6
935,063 - Rru_A0783 0.30 +0.0
935,110 - Rru_A0783 0.39 +0.0
935,151 + Rru_A0783 0.46 -1.2
935,237 + Rru_A0783 0.61 -1.3
935,238 - Rru_A0783 0.61 -1.5
935,269 + Rru_A0783 0.67 +0.0

Or see this region's nucleotide sequence