Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0724

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0723 and Rru_A0724 overlap by 4 nucleotidesRru_A0724 and Rru_A0725 are separated by 4 nucleotides Rru_A0723: Rru_A0723 - Amine oxidase (NCBI), at 850,905 to 852,290 _A0723 Rru_A0724: Rru_A0724 - Protein of unknown function DUF1365 (NCBI), at 852,287 to 853,108 _A0724 Rru_A0725: Rru_A0725 - Cyclopropane-fatty-acyl-phospholipid synthase (NCBI), at 853,113 to 854,396 _A0725 Position (kb) 852 853 854Strain fitness (log2 ratio) -1 0 1at 851.397 kb on - strand, within Rru_A0723at 851.409 kb on + strand, within Rru_A0723at 851.491 kb on - strand, within Rru_A0723at 851.590 kb on - strand, within Rru_A0723at 851.594 kb on + strand, within Rru_A0723at 851.723 kb on + strand, within Rru_A0723at 851.841 kb on - strand, within Rru_A0723at 851.928 kb on + strand, within Rru_A0723at 851.928 kb on + strand, within Rru_A0723at 852.027 kb on + strand, within Rru_A0723at 852.027 kb on + strand, within Rru_A0723at 852.033 kb on + strand, within Rru_A0723at 852.033 kb on + strand, within Rru_A0723at 852.034 kb on - strand, within Rru_A0723at 852.126 kb on + strand, within Rru_A0723at 852.126 kb on + strand, within Rru_A0723at 852.126 kb on + strand, within Rru_A0723at 852.127 kb on - strand, within Rru_A0723at 852.305 kb on + strandat 852.305 kb on + strandat 852.305 kb on + strandat 852.306 kb on - strandat 852.359 kb on + strandat 852.359 kb on + strandat 852.359 kb on + strandat 852.360 kb on - strandat 852.361 kb on + strandat 852.362 kb on - strandat 852.362 kb on - strandat 852.503 kb on + strand, within Rru_A0724at 852.503 kb on + strand, within Rru_A0724at 852.503 kb on + strand, within Rru_A0724at 852.504 kb on - strand, within Rru_A0724at 852.504 kb on - strand, within Rru_A0724at 852.506 kb on - strand, within Rru_A0724at 852.588 kb on - strand, within Rru_A0724at 852.637 kb on - strand, within Rru_A0724at 852.653 kb on + strand, within Rru_A0724at 852.653 kb on + strand, within Rru_A0724at 852.689 kb on + strand, within Rru_A0724at 852.689 kb on + strand, within Rru_A0724at 852.690 kb on - strand, within Rru_A0724at 852.749 kb on + strand, within Rru_A0724at 852.749 kb on + strand, within Rru_A0724at 852.750 kb on - strand, within Rru_A0724at 852.750 kb on - strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.783 kb on - strand, within Rru_A0724at 853.106 kb on + strandat 853.107 kb on - strandat 853.107 kb on - strandat 853.383 kb on + strand, within Rru_A0725at 853.383 kb on + strand, within Rru_A0725at 853.383 kb on + strand, within Rru_A0725at 853.383 kb on + strand, within Rru_A0725at 853.383 kb on + strand, within Rru_A0725at 853.384 kb on - strand, within Rru_A0725at 853.384 kb on - strand, within Rru_A0725at 853.385 kb on + strand, within Rru_A0725at 853.385 kb on + strand, within Rru_A0725at 853.385 kb on + strand, within Rru_A0725at 853.385 kb on + strand, within Rru_A0725at 853.386 kb on - strand, within Rru_A0725at 853.386 kb on - strand, within Rru_A0725at 853.386 kb on - strand, within Rru_A0725at 853.396 kb on + strand, within Rru_A0725at 853.566 kb on + strand, within Rru_A0725at 853.566 kb on + strand, within Rru_A0725at 853.567 kb on - strand, within Rru_A0725at 853.567 kb on - strand, within Rru_A0725at 853.587 kb on + strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.617 kb on + strand, within Rru_A0725at 853.618 kb on - strand, within Rru_A0725at 853.678 kb on - strand, within Rru_A0725at 853.678 kb on - strand, within Rru_A0725at 853.887 kb on + strand, within Rru_A0725at 853.887 kb on + strand, within Rru_A0725at 853.888 kb on - strand, within Rru_A0725at 853.888 kb on - strand, within Rru_A0725at 853.969 kb on - strand, within Rru_A0725at 853.969 kb on - strand, within Rru_A0725at 854.055 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.088 kb on - strand, within Rru_A0725at 854.088 kb on - strand, within Rru_A0725at 854.088 kb on - strand, within Rru_A0725

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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851,397 - Rru_A0723 0.35 -0.1
851,409 + Rru_A0723 0.36 +0.0
851,491 - Rru_A0723 0.42 -1.2
851,590 - Rru_A0723 0.49 +0.0
851,594 + Rru_A0723 0.50 +0.0
851,723 + Rru_A0723 0.59 +0.0
851,841 - Rru_A0723 0.68 +0.0
851,928 + Rru_A0723 0.74 +0.0
851,928 + Rru_A0723 0.74 +0.0
852,027 + Rru_A0723 0.81 +0.0
852,027 + Rru_A0723 0.81 -0.6
852,033 + Rru_A0723 0.81 +0.0
852,033 + Rru_A0723 0.81 -0.8
852,034 - Rru_A0723 0.81 +0.0
852,126 + Rru_A0723 0.88 -0.7
852,126 + Rru_A0723 0.88 -0.7
852,126 + Rru_A0723 0.88 +0.0
852,127 - Rru_A0723 0.88 -1.0
852,305 + +0.0
852,305 + -0.6
852,305 + +0.0
852,306 - -0.6
852,359 + +0.0
852,359 + -0.6
852,359 + +0.0
852,360 - -0.9
852,361 + -0.6
852,362 - +0.0
852,362 - +0.0
852,503 + Rru_A0724 0.26 +0.0
852,503 + Rru_A0724 0.26 +0.1
852,503 + Rru_A0724 0.26 +0.0
852,504 - Rru_A0724 0.26 +0.0
852,504 - Rru_A0724 0.26 +0.0
852,506 - Rru_A0724 0.27 -0.8
852,588 - Rru_A0724 0.37 +0.0
852,637 - Rru_A0724 0.43 +0.0
852,653 + Rru_A0724 0.45 -0.8
852,653 + Rru_A0724 0.45 +0.0
852,689 + Rru_A0724 0.49 -1.5
852,689 + Rru_A0724 0.49 -0.9
852,690 - Rru_A0724 0.49 +0.0
852,749 + Rru_A0724 0.56 -0.7
852,749 + Rru_A0724 0.56 +0.0
852,750 - Rru_A0724 0.56 +0.0
852,750 - Rru_A0724 0.56 +0.0
852,782 + Rru_A0724 0.60 -0.8
852,782 + Rru_A0724 0.60 +0.0
852,782 + Rru_A0724 0.60 +0.0
852,782 + Rru_A0724 0.60 +0.0
852,782 + Rru_A0724 0.60 +0.0
852,782 + Rru_A0724 0.60 +0.0
852,783 - Rru_A0724 0.60 +0.0
853,106 + +0.0
853,107 - -1.0
853,107 - -1.1
853,383 + Rru_A0725 0.21 -0.9
853,383 + Rru_A0725 0.21 +0.0
853,383 + Rru_A0725 0.21 +0.0
853,383 + Rru_A0725 0.21 -0.7
853,383 + Rru_A0725 0.21 -0.4
853,384 - Rru_A0725 0.21 -0.7
853,384 - Rru_A0725 0.21 -0.9
853,385 + Rru_A0725 0.21 +0.0
853,385 + Rru_A0725 0.21 +0.0
853,385 + Rru_A0725 0.21 +0.0
853,385 + Rru_A0725 0.21 +0.0
853,386 - Rru_A0725 0.21 +0.0
853,386 - Rru_A0725 0.21 +0.0
853,386 - Rru_A0725 0.21 -0.6
853,396 + Rru_A0725 0.22 +0.0
853,566 + Rru_A0725 0.35 +0.0
853,566 + Rru_A0725 0.35 +0.0
853,567 - Rru_A0725 0.35 -1.0
853,567 - Rru_A0725 0.35 -1.2
853,587 + Rru_A0725 0.37 +0.0
853,588 - Rru_A0725 0.37 -0.5
853,588 - Rru_A0725 0.37 -1.3
853,588 - Rru_A0725 0.37 +0.0
853,588 - Rru_A0725 0.37 +0.0
853,588 - Rru_A0725 0.37 +0.0
853,588 - Rru_A0725 0.37 -1.0
853,588 - Rru_A0725 0.37 +0.0
853,617 + Rru_A0725 0.39 +0.0
853,618 - Rru_A0725 0.39 -0.8
853,678 - Rru_A0725 0.44 +0.0
853,678 - Rru_A0725 0.44 -1.0
853,887 + Rru_A0725 0.60 +0.0
853,887 + Rru_A0725 0.60 -0.2
853,888 - Rru_A0725 0.60 -0.9
853,888 - Rru_A0725 0.60 +0.0
853,969 - Rru_A0725 0.67 +0.0
853,969 - Rru_A0725 0.67 +0.0
854,055 + Rru_A0725 0.73 +0.0
854,087 + Rru_A0725 0.76 +0.0
854,087 + Rru_A0725 0.76 +0.0
854,087 + Rru_A0725 0.76 -0.8
854,087 + Rru_A0725 0.76 +0.0
854,088 - Rru_A0725 0.76 +0.0
854,088 - Rru_A0725 0.76 +0.0
854,088 - Rru_A0725 0.76 +0.0

Or see this region's nucleotide sequence