Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0531 and Rru_A0532 are separated by 92 nucleotides Rru_A0532 and Rru_A0533 are separated by 47 nucleotides
Rru_A0531: Rru_A0531 - hypothetical protein (NCBI), at 625,425 to 627,191
_A0531
Rru_A0532: Rru_A0532 - Cobyrinic acid a,c-diamide synthase (NCBI), at 627,284 to 628,057
_A0532
Rru_A0533: Rru_A0533 - GTP-binding signal recognition particle SRP54, G-domain (NCBI), at 628,105 to 629,211
_A0533
Position (kb) 627
628
629 Strain fitness (log2 ratio) -1
0
1 at 627.285 kb on + strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.469 kb on - strand, within Rru_A0532 at 627.469 kb on - strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.647 kb on - strand, within Rru_A0532 at 627.684 kb on + strand, within Rru_A0532 at 627.684 kb on + strand, within Rru_A0532 at 628.015 kb on + strand at 628.015 kb on + strand at 628.015 kb on + strand at 628.016 kb on - strand at 628.016 kb on - strand at 628.121 kb on + strand at 628.128 kb on + strand at 628.129 kb on - strand at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.456 kb on - strand, within Rru_A0533 at 628.456 kb on - strand, within Rru_A0533 at 628.456 kb on - strand, within Rru_A0533 at 628.469 kb on + strand, within Rru_A0533 at 628.469 kb on + strand, within Rru_A0533 at 628.470 kb on - strand, within Rru_A0533 at 628.470 kb on - strand, within Rru_A0533 at 628.470 kb on - strand, within Rru_A0533 at 628.542 kb on + strand, within Rru_A0533 at 628.542 kb on + strand, within Rru_A0533 at 628.542 kb on + strand, within Rru_A0533 at 628.543 kb on - strand, within Rru_A0533 at 628.587 kb on + strand, within Rru_A0533 at 628.588 kb on - strand, within Rru_A0533 at 628.828 kb on + strand, within Rru_A0533 at 628.829 kb on - strand, within Rru_A0533 at 628.829 kb on - strand, within Rru_A0533
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 627,285 + +0.0 627,286 - +0.0 627,286 - -0.0 627,286 - +0.0 627,286 - +0.0 627,469 - Rru_A0532 0.24 +0.0 627,469 - Rru_A0532 0.24 -0.3 627,564 + Rru_A0532 0.36 -0.7 627,564 + Rru_A0532 0.36 +0.0 627,564 + Rru_A0532 0.36 +0.0 627,565 - Rru_A0532 0.36 +0.0 627,565 - Rru_A0532 0.36 +0.0 627,565 - Rru_A0532 0.36 +0.0 627,647 - Rru_A0532 0.47 +0.3 627,684 + Rru_A0532 0.52 +0.0 627,684 + Rru_A0532 0.52 -0.5 628,015 + +0.0 628,015 + -0.5 628,015 + +0.0 628,016 - +0.0 628,016 - +0.0 628,121 + +0.5 628,128 + +0.0 628,129 - +0.0 628,455 + Rru_A0533 0.32 -0.9 628,455 + Rru_A0533 0.32 +0.0 628,455 + Rru_A0533 0.32 +0.0 628,455 + Rru_A0533 0.32 +0.0 628,455 + Rru_A0533 0.32 -0.7 628,456 - Rru_A0533 0.32 +0.0 628,456 - Rru_A0533 0.32 +0.0 628,456 - Rru_A0533 0.32 +0.0 628,469 + Rru_A0533 0.33 +0.0 628,469 + Rru_A0533 0.33 -0.9 628,470 - Rru_A0533 0.33 +0.0 628,470 - Rru_A0533 0.33 +0.0 628,470 - Rru_A0533 0.33 +0.0 628,542 + Rru_A0533 0.39 +0.0 628,542 + Rru_A0533 0.39 -0.9 628,542 + Rru_A0533 0.39 +0.0 628,543 - Rru_A0533 0.40 +0.0 628,587 + Rru_A0533 0.44 -0.3 628,588 - Rru_A0533 0.44 +0.0 628,828 + Rru_A0533 0.65 -0.9 628,829 - Rru_A0533 0.65 +0.0 628,829 - Rru_A0533 0.65 +0.0
Or see this region's nucleotide sequence