Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0528

Experiment: L-Malic Acid (C) and N2; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0526 and Rru_A0527 are separated by 98 nucleotidesRru_A0527 and Rru_A0528 overlap by 50 nucleotidesRru_A0528 and Rru_A0529 are separated by 10 nucleotidesRru_A0529 and Rru_A0530 are separated by 126 nucleotides Rru_A0526: Rru_A0526 - ATPase FliI/YscN (NCBI), at 620,682 to 622,109 _A0526 Rru_A0527: Rru_A0527 - hypothetical protein (NCBI), at 622,208 to 622,660 _A0527 Rru_A0528: Rru_A0528 - Heat shock protein DnaJ-like (NCBI), at 622,611 to 623,867 _A0528 Rru_A0529: Rru_A0529 - hypothetical protein (NCBI), at 623,878 to 624,309 _A0529 Rru_A0530: Rru_A0530 - Ferredoxin--NADP+ reductase (NCBI), at 624,436 to 625,209 _A0530 Position (kb) 622 623 624Strain fitness (log2 ratio) -1 0 1at 621.689 kb on + strand, within Rru_A0526at 621.689 kb on + strand, within Rru_A0526at 621.690 kb on - strand, within Rru_A0526at 621.740 kb on + strand, within Rru_A0526at 621.741 kb on - strand, within Rru_A0526at 621.776 kb on + strand, within Rru_A0526at 621.777 kb on - strand, within Rru_A0526at 621.831 kb on + strand, within Rru_A0526at 621.831 kb on + strand, within Rru_A0526at 621.832 kb on - strand, within Rru_A0526at 621.840 kb on - strand, within Rru_A0526at 621.975 kb on + strandat 622.107 kb on + strandat 622.108 kb on - strandat 622.129 kb on + strandat 622.130 kb on - strandat 622.130 kb on - strandat 622.160 kb on + strandat 622.160 kb on + strandat 622.243 kb on + strandat 622.421 kb on + strand, within Rru_A0527at 622.421 kb on + strand, within Rru_A0527at 622.422 kb on - strand, within Rru_A0527at 622.422 kb on - strand, within Rru_A0527at 622.894 kb on + strand, within Rru_A0528at 622.895 kb on - strand, within Rru_A0528at 622.895 kb on - strand, within Rru_A0528at 622.943 kb on + strand, within Rru_A0528at 622.943 kb on + strand, within Rru_A0528at 622.943 kb on + strand, within Rru_A0528at 622.943 kb on + strand, within Rru_A0528at 622.943 kb on + strand, within Rru_A0528at 622.944 kb on - strand, within Rru_A0528at 623.530 kb on + strand, within Rru_A0528at 623.530 kb on + strand, within Rru_A0528at 623.530 kb on + strand, within Rru_A0528at 623.531 kb on - strand, within Rru_A0528at 623.659 kb on + strand, within Rru_A0528at 623.659 kb on + strand, within Rru_A0528at 623.660 kb on - strand, within Rru_A0528at 623.695 kb on + strand, within Rru_A0528at 623.695 kb on + strand, within Rru_A0528at 623.696 kb on - strand, within Rru_A0528at 623.696 kb on - strand, within Rru_A0528at 623.696 kb on - strand, within Rru_A0528at 623.834 kb on - strandat 623.834 kb on - strandat 623.836 kb on + strandat 623.836 kb on + strandat 623.837 kb on - strandat 623.837 kb on - strandat 623.837 kb on - strandat 623.837 kb on - strandat 623.837 kb on - strandat 623.837 kb on - strandat 623.862 kb on - strandat 624.127 kb on - strand, within Rru_A0529at 624.128 kb on + strand, within Rru_A0529at 624.128 kb on + strand, within Rru_A0529at 624.208 kb on + strand, within Rru_A0529at 624.208 kb on + strand, within Rru_A0529at 624.208 kb on + strand, within Rru_A0529at 624.245 kb on + strand, within Rru_A0529at 624.245 kb on + strand, within Rru_A0529at 624.245 kb on + strand, within Rru_A0529at 624.245 kb on + strand, within Rru_A0529at 624.245 kb on + strand, within Rru_A0529at 624.246 kb on - strand, within Rru_A0529at 624.246 kb on - strand, within Rru_A0529at 624.246 kb on - strand, within Rru_A0529at 624.246 kb on - strand, within Rru_A0529at 624.246 kb on - strand, within Rru_A0529at 624.246 kb on - strand, within Rru_A0529at 624.246 kb on - strand, within Rru_A0529at 624.246 kb on - strand, within Rru_A0529at 624.340 kb on + strandat 624.348 kb on + strandat 624.348 kb on + strandat 624.349 kb on - strandat 624.349 kb on - strandat 624.388 kb on - strandat 624.437 kb on + strandat 624.437 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
remove
621,689 + Rru_A0526 0.71 -0.4
621,689 + Rru_A0526 0.71 +0.0
621,690 - Rru_A0526 0.71 -0.9
621,740 + Rru_A0526 0.74 +0.0
621,741 - Rru_A0526 0.74 -0.5
621,776 + Rru_A0526 0.77 -0.9
621,777 - Rru_A0526 0.77 +0.0
621,831 + Rru_A0526 0.80 +0.0
621,831 + Rru_A0526 0.80 +0.0
621,832 - Rru_A0526 0.81 +0.0
621,840 - Rru_A0526 0.81 +0.0
621,975 + +0.0
622,107 + +0.0
622,108 - +0.0
622,129 + +0.0
622,130 - +0.0
622,130 - +0.0
622,160 + +0.0
622,160 + +0.0
622,243 + -0.3
622,421 + Rru_A0527 0.47 +0.0
622,421 + Rru_A0527 0.47 +0.0
622,422 - Rru_A0527 0.47 +0.0
622,422 - Rru_A0527 0.47 +0.0
622,894 + Rru_A0528 0.23 -0.2
622,895 - Rru_A0528 0.23 -1.6
622,895 - Rru_A0528 0.23 +0.0
622,943 + Rru_A0528 0.26 -0.2
622,943 + Rru_A0528 0.26 +0.0
622,943 + Rru_A0528 0.26 +0.0
622,943 + Rru_A0528 0.26 +0.0
622,943 + Rru_A0528 0.26 +0.0
622,944 - Rru_A0528 0.26 -0.2
623,530 + Rru_A0528 0.73 -0.7
623,530 + Rru_A0528 0.73 -1.0
623,530 + Rru_A0528 0.73 -0.4
623,531 - Rru_A0528 0.73 +0.0
623,659 + Rru_A0528 0.83 +0.0
623,659 + Rru_A0528 0.83 +0.0
623,660 - Rru_A0528 0.83 +0.0
623,695 + Rru_A0528 0.86 -0.3
623,695 + Rru_A0528 0.86 -0.2
623,696 - Rru_A0528 0.86 +0.0
623,696 - Rru_A0528 0.86 -0.4
623,696 - Rru_A0528 0.86 +0.0
623,834 - +0.0
623,834 - -0.6
623,836 + +0.0
623,836 + -0.5
623,837 - +0.0
623,837 - +0.0
623,837 - +0.0
623,837 - +0.9
623,837 - +0.0
623,837 - +0.0
623,862 - -0.8
624,127 - Rru_A0529 0.58 +0.0
624,128 + Rru_A0529 0.58 -1.0
624,128 + Rru_A0529 0.58 +0.0
624,208 + Rru_A0529 0.76 +0.0
624,208 + Rru_A0529 0.76 +0.0
624,208 + Rru_A0529 0.76 +0.0
624,245 + Rru_A0529 0.85 +0.0
624,245 + Rru_A0529 0.85 -0.4
624,245 + Rru_A0529 0.85 +0.0
624,245 + Rru_A0529 0.85 +0.0
624,245 + Rru_A0529 0.85 +0.0
624,246 - Rru_A0529 0.85 +0.0
624,246 - Rru_A0529 0.85 +0.0
624,246 - Rru_A0529 0.85 +0.0
624,246 - Rru_A0529 0.85 -0.4
624,246 - Rru_A0529 0.85 +0.0
624,246 - Rru_A0529 0.85 -0.3
624,246 - Rru_A0529 0.85 +0.0
624,246 - Rru_A0529 0.85 +0.0
624,340 + +0.1
624,348 + +0.0
624,348 + +0.0
624,349 - -1.2
624,349 - +0.0
624,388 - -1.3
624,437 + -0.7
624,437 + +0.0

Or see this region's nucleotide sequence