Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0462

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0461 and Rru_A0462 are separated by 26 nucleotidesRru_A0462 and Rru_A0463 are separated by 150 nucleotides Rru_A0461: Rru_A0461 - Transcriptional Regulator, LysR family (NCBI), at 540,748 to 541,641 _A0461 Rru_A0462: Rru_A0462 - Aldehyde dehydrogenase (NCBI), at 541,668 to 543,248 _A0462 Rru_A0463: Rru_A0463 - Alanine racemase-like (NCBI), at 543,399 to 544,469 _A0463 Position (kb) 541 542 543 544Strain fitness (log2 ratio) -2 -1 0 1at 540.940 kb on + strand, within Rru_A0461at 540.941 kb on - strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.944 kb on - strand, within Rru_A0461at 540.944 kb on - strand, within Rru_A0461at 541.087 kb on + strand, within Rru_A0461at 541.122 kb on + strand, within Rru_A0461at 541.179 kb on + strand, within Rru_A0461at 541.254 kb on + strand, within Rru_A0461at 541.255 kb on - strand, within Rru_A0461at 541.255 kb on - strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.259 kb on - strand, within Rru_A0461at 541.259 kb on - strand, within Rru_A0461at 541.259 kb on - strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.327 kb on + strand, within Rru_A0461at 541.327 kb on + strand, within Rru_A0461at 541.327 kb on + strand, within Rru_A0461at 541.639 kb on + strandat 541.640 kb on - strandat 541.873 kb on - strand, within Rru_A0462at 541.873 kb on - strand, within Rru_A0462at 541.873 kb on - strand, within Rru_A0462at 542.059 kb on - strand, within Rru_A0462at 542.142 kb on + strand, within Rru_A0462at 542.142 kb on + strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.145 kb on + strand, within Rru_A0462at 542.145 kb on + strand, within Rru_A0462at 542.145 kb on + strand, within Rru_A0462at 542.146 kb on - strand, within Rru_A0462at 542.146 kb on - strand, within Rru_A0462at 542.146 kb on - strand, within Rru_A0462at 542.146 kb on - strand, within Rru_A0462at 542.171 kb on + strand, within Rru_A0462at 542.171 kb on + strand, within Rru_A0462at 542.172 kb on - strand, within Rru_A0462at 542.172 kb on - strand, within Rru_A0462at 542.172 kb on - strand, within Rru_A0462at 542.265 kb on + strand, within Rru_A0462at 542.266 kb on - strand, within Rru_A0462at 542.268 kb on + strand, within Rru_A0462at 542.269 kb on - strand, within Rru_A0462at 542.269 kb on - strand, within Rru_A0462at 542.403 kb on + strand, within Rru_A0462at 542.403 kb on + strand, within Rru_A0462at 542.404 kb on - strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.406 kb on - strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.425 kb on - strand, within Rru_A0462at 542.425 kb on - strand, within Rru_A0462at 542.597 kb on + strand, within Rru_A0462at 543.175 kb on + strandat 543.175 kb on + strandat 543.176 kb on - strandat 543.299 kb on + strandat 543.300 kb on - strandat 543.455 kb on + strandat 543.458 kb on + strandat 543.459 kb on - strandat 543.512 kb on + strand, within Rru_A0463at 543.513 kb on - strand, within Rru_A0463at 543.513 kb on - strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.662 kb on + strand, within Rru_A0463at 543.663 kb on - strand, within Rru_A0463at 543.663 kb on - strand, within Rru_A0463at 543.918 kb on + strand, within Rru_A0463at 543.918 kb on + strand, within Rru_A0463at 543.919 kb on - strand, within Rru_A0463at 543.919 kb on - strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.091 kb on + strand, within Rru_A0463at 544.091 kb on + strand, within Rru_A0463

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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540,940 + Rru_A0461 0.21 +0.0
540,941 - Rru_A0461 0.22 -1.0
540,943 + Rru_A0461 0.22 +0.0
540,943 + Rru_A0461 0.22 +0.0
540,943 + Rru_A0461 0.22 -1.0
540,943 + Rru_A0461 0.22 +0.0
540,944 - Rru_A0461 0.22 +0.0
540,944 - Rru_A0461 0.22 -1.0
541,087 + Rru_A0461 0.38 -0.6
541,122 + Rru_A0461 0.42 +0.0
541,179 + Rru_A0461 0.48 -1.1
541,254 + Rru_A0461 0.57 -0.9
541,255 - Rru_A0461 0.57 +0.0
541,255 - Rru_A0461 0.57 +0.0
541,258 + Rru_A0461 0.57 +0.0
541,258 + Rru_A0461 0.57 +0.0
541,258 + Rru_A0461 0.57 -1.1
541,258 + Rru_A0461 0.57 +0.0
541,258 + Rru_A0461 0.57 +0.0
541,259 - Rru_A0461 0.57 -1.2
541,259 - Rru_A0461 0.57 -1.4
541,259 - Rru_A0461 0.57 -0.8
541,321 + Rru_A0461 0.64 -0.8
541,321 + Rru_A0461 0.64 -1.3
541,321 + Rru_A0461 0.64 +0.0
541,321 + Rru_A0461 0.64 -1.0
541,322 - Rru_A0461 0.64 +0.0
541,322 - Rru_A0461 0.64 -1.0
541,322 - Rru_A0461 0.64 +0.0
541,322 - Rru_A0461 0.64 +0.0
541,322 - Rru_A0461 0.64 -1.1
541,322 - Rru_A0461 0.64 -1.0
541,327 + Rru_A0461 0.65 +0.0
541,327 + Rru_A0461 0.65 +0.0
541,327 + Rru_A0461 0.65 +0.0
541,639 + +0.0
541,640 - +0.0
541,873 - Rru_A0462 0.13 +0.0
541,873 - Rru_A0462 0.13 +0.0
541,873 - Rru_A0462 0.13 +0.0
542,059 - Rru_A0462 0.25 +0.0
542,142 + Rru_A0462 0.30 +0.0
542,142 + Rru_A0462 0.30 -1.1
542,143 - Rru_A0462 0.30 -1.2
542,143 - Rru_A0462 0.30 +0.0
542,143 - Rru_A0462 0.30 -1.0
542,143 - Rru_A0462 0.30 +0.0
542,143 - Rru_A0462 0.30 -1.2
542,143 - Rru_A0462 0.30 +0.0
542,143 - Rru_A0462 0.30 -0.9
542,145 + Rru_A0462 0.30 -0.9
542,145 + Rru_A0462 0.30 -1.0
542,145 + Rru_A0462 0.30 -2.1
542,146 - Rru_A0462 0.30 +0.0
542,146 - Rru_A0462 0.30 -1.0
542,146 - Rru_A0462 0.30 -1.0
542,146 - Rru_A0462 0.30 -1.4
542,171 + Rru_A0462 0.32 -1.2
542,171 + Rru_A0462 0.32 +0.0
542,172 - Rru_A0462 0.32 +0.0
542,172 - Rru_A0462 0.32 +0.0
542,172 - Rru_A0462 0.32 +0.0
542,265 + Rru_A0462 0.38 +0.0
542,266 - Rru_A0462 0.38 +0.0
542,268 + Rru_A0462 0.38 +0.0
542,269 - Rru_A0462 0.38 +0.0
542,269 - Rru_A0462 0.38 +0.0
542,403 + Rru_A0462 0.46 -1.2
542,403 + Rru_A0462 0.46 -0.2
542,404 - Rru_A0462 0.47 -1.3
542,405 + Rru_A0462 0.47 +0.0
542,405 + Rru_A0462 0.47 +0.0
542,405 + Rru_A0462 0.47 +0.0
542,406 - Rru_A0462 0.47 +0.0
542,424 + Rru_A0462 0.48 +0.0
542,424 + Rru_A0462 0.48 +0.0
542,424 + Rru_A0462 0.48 +0.0
542,425 - Rru_A0462 0.48 +0.0
542,425 - Rru_A0462 0.48 +0.0
542,597 + Rru_A0462 0.59 -1.2
543,175 + +0.0
543,175 + -1.0
543,176 - -1.3
543,299 + +0.0
543,300 - +0.0
543,455 + +0.0
543,458 + +0.0
543,459 - -1.4
543,512 + Rru_A0463 0.11 -0.9
543,513 - Rru_A0463 0.11 -1.0
543,513 - Rru_A0463 0.11 +0.0
543,660 + Rru_A0463 0.24 +0.0
543,660 + Rru_A0463 0.24 -0.7
543,660 + Rru_A0463 0.24 +0.0
543,660 + Rru_A0463 0.24 -0.8
543,660 + Rru_A0463 0.24 -1.2
543,660 + Rru_A0463 0.24 -1.0
543,660 + Rru_A0463 0.24 +0.0
543,660 + Rru_A0463 0.24 +0.0
543,661 - Rru_A0463 0.24 +0.0
543,661 - Rru_A0463 0.24 +0.0
543,661 - Rru_A0463 0.24 +0.0
543,661 - Rru_A0463 0.24 +0.0
543,661 - Rru_A0463 0.24 +0.0
543,661 - Rru_A0463 0.24 +0.0
543,661 - Rru_A0463 0.24 -1.3
543,661 - Rru_A0463 0.24 +0.0
543,661 - Rru_A0463 0.24 -1.3
543,661 - Rru_A0463 0.24 -1.8
543,661 - Rru_A0463 0.24 +0.0
543,662 + Rru_A0463 0.25 +0.0
543,663 - Rru_A0463 0.25 +0.0
543,663 - Rru_A0463 0.25 -1.0
543,918 + Rru_A0463 0.48 -1.0
543,918 + Rru_A0463 0.48 +0.0
543,919 - Rru_A0463 0.49 +0.0
543,919 - Rru_A0463 0.49 +0.0
544,083 + Rru_A0463 0.64 +0.0
544,083 + Rru_A0463 0.64 +0.0
544,083 + Rru_A0463 0.64 +0.0
544,084 - Rru_A0463 0.64 -0.9
544,084 - Rru_A0463 0.64 +0.0
544,084 - Rru_A0463 0.64 +0.0
544,084 - Rru_A0463 0.64 -1.1
544,089 + Rru_A0463 0.64 +0.0
544,089 + Rru_A0463 0.64 +0.0
544,089 + Rru_A0463 0.64 +0.0
544,089 + Rru_A0463 0.64 -1.1
544,089 + Rru_A0463 0.64 -1.4
544,089 + Rru_A0463 0.64 +0.0
544,090 - Rru_A0463 0.65 -1.3
544,090 - Rru_A0463 0.65 -1.4
544,090 - Rru_A0463 0.65 -1.0
544,090 - Rru_A0463 0.65 +0.0
544,090 - Rru_A0463 0.65 -1.5
544,090 - Rru_A0463 0.65 +0.0
544,090 - Rru_A0463 0.65 +0.0
544,091 + Rru_A0463 0.65 +0.0
544,091 + Rru_A0463 0.65 -1.3

Or see this region's nucleotide sequence