Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0416 and Rru_A0417 are separated by 194 nucleotides Rru_A0417 and Rru_A0418 are separated by 158 nucleotides Rru_A0418 and Rru_A0419 are separated by 29 nucleotides
Rru_A0416: Rru_A0416 - 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI), at 492,577 to 493,314
_A0416
Rru_A0417: Rru_A0417 - Acyl carrier protein (ACP) (NCBI), at 493,509 to 493,742
_A0417
Rru_A0418: Rru_A0418 - Beta-ketoacyl synthase (NCBI), at 493,901 to 495,163
_A0418
Rru_A0419: Rru_A0419 - Aminodeoxychorismate lyase (NCBI), at 495,193 to 496,179
_A0419
Position (kb) 493
494
495
496 Strain fitness (log2 ratio) -1
0
1 at 493.405 kb on + strand at 493.405 kb on + strand at 493.405 kb on + strand at 493.405 kb on + strand at 493.410 kb on + strand at 493.410 kb on + strand at 493.410 kb on + strand at 493.426 kb on + strand at 495.187 kb on - strand at 495.257 kb on - strand at 495.257 kb on - strand at 495.257 kb on - strand at 495.257 kb on - strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.263 kb on - strand at 495.263 kb on - strand at 495.263 kb on - strand at 495.263 kb on - strand at 495.640 kb on + strand, within Rru_A0419 at 495.640 kb on + strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.643 kb on - strand, within Rru_A0419 at 495.643 kb on - strand, within Rru_A0419 at 495.643 kb on - strand, within Rru_A0419 at 495.646 kb on + strand, within Rru_A0419 at 495.646 kb on + strand, within Rru_A0419 at 495.647 kb on - strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 493,405 + +0.0 493,405 + +0.0 493,405 + +0.0 493,405 + +0.0 493,410 + +0.0 493,410 + +0.0 493,410 + -1.0 493,426 + -0.7 495,187 - +0.0 495,257 - +0.0 495,257 - +0.0 495,257 - +0.0 495,257 - +0.0 495,262 + +0.0 495,262 + +0.0 495,262 + +0.0 495,262 + -1.0 495,262 + -0.8 495,262 + +0.0 495,262 + -1.0 495,263 - -1.0 495,263 - -0.7 495,263 - +0.0 495,263 - +0.0 495,640 + Rru_A0419 0.45 +0.0 495,640 + Rru_A0419 0.45 +0.0 495,641 - Rru_A0419 0.45 +0.0 495,641 - Rru_A0419 0.45 +0.0 495,641 - Rru_A0419 0.45 +0.0 495,641 - Rru_A0419 0.45 -1.0 495,642 + Rru_A0419 0.45 +0.0 495,642 + Rru_A0419 0.45 -0.5 495,642 + Rru_A0419 0.45 +0.0 495,642 + Rru_A0419 0.45 +0.0 495,643 - Rru_A0419 0.46 +0.5 495,643 - Rru_A0419 0.46 +0.0 495,643 - Rru_A0419 0.46 +0.0 495,646 + Rru_A0419 0.46 +0.0 495,646 + Rru_A0419 0.46 +0.0 495,647 - Rru_A0419 0.46 +0.0 495,892 + Rru_A0419 0.71 +0.0 495,892 + Rru_A0419 0.71 -1.1 495,892 + Rru_A0419 0.71 +0.0 495,892 + Rru_A0419 0.71 +0.0 495,892 + Rru_A0419 0.71 +0.0 495,892 + Rru_A0419 0.71 +0.0 495,893 - Rru_A0419 0.71 +0.0 495,893 - Rru_A0419 0.71 +0.0 495,893 - Rru_A0419 0.71 +0.0 495,893 - Rru_A0419 0.71 +0.0 495,893 - Rru_A0419 0.71 +0.0 495,893 - Rru_A0419 0.71 -0.8 495,973 + Rru_A0419 0.79 -1.2 495,973 + Rru_A0419 0.79 +0.0 495,973 + Rru_A0419 0.79 +0.0 495,973 + Rru_A0419 0.79 +0.0 495,973 + Rru_A0419 0.79 +0.0 495,973 + Rru_A0419 0.79 -1.7 495,973 + Rru_A0419 0.79 +0.0 495,973 + Rru_A0419 0.79 +0.0 495,974 - Rru_A0419 0.79 -0.7 495,974 - Rru_A0419 0.79 -1.0 495,974 - Rru_A0419 0.79 -1.0 495,974 - Rru_A0419 0.79 +0.3 495,974 - Rru_A0419 0.79 -1.0 496,066 + Rru_A0419 0.88 +0.0 496,066 + Rru_A0419 0.88 +0.0 496,066 + Rru_A0419 0.88 -0.9 496,066 + Rru_A0419 0.88 +0.0 496,067 - Rru_A0419 0.89 -0.8 496,067 - Rru_A0419 0.89 +0.0 496,067 - Rru_A0419 0.89 +0.0
Or see this region's nucleotide sequence