Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0417

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0416 and Rru_A0417 are separated by 194 nucleotidesRru_A0417 and Rru_A0418 are separated by 158 nucleotides Rru_A0416: Rru_A0416 - 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI), at 492,577 to 493,314 _A0416 Rru_A0417: Rru_A0417 - Acyl carrier protein (ACP) (NCBI), at 493,509 to 493,742 _A0417 Rru_A0418: Rru_A0418 - Beta-ketoacyl synthase (NCBI), at 493,901 to 495,163 _A0418 Position (kb) 493 494Strain fitness (log2 ratio) -1 0 1at 492.515 kb on + strandat 492.522 kb on - strandat 492.522 kb on - strandat 493.405 kb on + strandat 493.405 kb on + strandat 493.405 kb on + strandat 493.405 kb on + strandat 493.410 kb on + strandat 493.410 kb on + strandat 493.410 kb on + strandat 493.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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492,515 + +0.0
492,522 - +0.0
492,522 - +0.0
493,405 + +0.0
493,405 + +0.0
493,405 + +0.0
493,405 + +0.0
493,410 + +0.0
493,410 + +0.0
493,410 + -1.0
493,426 + -0.7

Or see this region's nucleotide sequence