Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0382 and Rru_A0383 are separated by 135 nucleotides Rru_A0383 and Rru_A0384 are separated by 130 nucleotides Rru_A0384 and Rru_A0385 are separated by 305 nucleotides
Rru_A0382: Rru_A0382 - Transcriptional Regulator, MerR family (NCBI), at 460,121 to 460,585
_A0382
Rru_A0383: Rru_A0383 - SH3 domain protein (NCBI), at 460,721 to 461,086
_A0383
Rru_A0384: Rru_A0384 - NADPH-quinone reductase (NCBI), at 461,217 to 462,236
_A0384
Rru_A0385: Rru_A0385 - Gamma-glutamyltransferase (NCBI), at 462,542 to 464,272
_A0385
Position (kb) 461
462
463 Strain fitness (log2 ratio) -1
0
1 at 460.474 kb on + strand, within Rru_A0382 at 460.475 kb on - strand, within Rru_A0382 at 460.475 kb on - strand, within Rru_A0382 at 460.637 kb on + strand at 460.737 kb on - strand at 460.737 kb on - strand at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 461.001 kb on + strand, within Rru_A0383 at 461.002 kb on - strand, within Rru_A0383 at 461.067 kb on + strand at 461.067 kb on + strand at 461.068 kb on - strand at 461.084 kb on + strand at 461.084 kb on + strand at 461.093 kb on - strand at 461.185 kb on + strand at 461.365 kb on - strand, within Rru_A0384 at 461.365 kb on - strand, within Rru_A0384 at 461.505 kb on + strand, within Rru_A0384 at 461.505 kb on + strand, within Rru_A0384 at 461.506 kb on - strand, within Rru_A0384 at 461.553 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.563 kb on - strand, within Rru_A0384 at 461.563 kb on - strand, within Rru_A0384 at 461.883 kb on + strand, within Rru_A0384 at 461.884 kb on - strand, within Rru_A0384 at 461.884 kb on - strand, within Rru_A0384 at 462.146 kb on + strand at 462.146 kb on + strand at 462.146 kb on + strand at 462.147 kb on - strand at 462.147 kb on - strand at 462.154 kb on - strand at 462.213 kb on - strand at 462.213 kb on - strand at 462.213 kb on - strand at 462.328 kb on + strand at 462.414 kb on + strand at 462.415 kb on - strand at 462.415 kb on - strand at 462.415 kb on - strand at 462.415 kb on - strand at 462.800 kb on - strand, within Rru_A0385 at 462.944 kb on + strand, within Rru_A0385
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 460,474 + Rru_A0382 0.76 -1.0 460,475 - Rru_A0382 0.76 +0.0 460,475 - Rru_A0382 0.76 -1.0 460,637 + +0.0 460,737 - +0.0 460,737 - -0.8 460,821 - Rru_A0383 0.27 +0.0 460,821 - Rru_A0383 0.27 +0.0 460,821 - Rru_A0383 0.27 +0.0 460,821 - Rru_A0383 0.27 +0.0 460,850 + Rru_A0383 0.35 -1.0 460,850 + Rru_A0383 0.35 +0.0 460,850 + Rru_A0383 0.35 -0.9 461,001 + Rru_A0383 0.77 +0.0 461,002 - Rru_A0383 0.77 -0.5 461,067 + -0.9 461,067 + +0.0 461,068 - +0.0 461,084 + +0.0 461,084 + -1.0 461,093 - +0.0 461,185 + +0.0 461,365 - Rru_A0384 0.15 -0.9 461,365 - Rru_A0384 0.15 +0.0 461,505 + Rru_A0384 0.28 -1.0 461,505 + Rru_A0384 0.28 -0.7 461,506 - Rru_A0384 0.28 -0.5 461,553 + Rru_A0384 0.33 +0.0 461,562 + Rru_A0384 0.34 +0.0 461,562 + Rru_A0384 0.34 -1.2 461,562 + Rru_A0384 0.34 -0.4 461,562 + Rru_A0384 0.34 -0.8 461,562 + Rru_A0384 0.34 +0.0 461,563 - Rru_A0384 0.34 -1.1 461,563 - Rru_A0384 0.34 +0.0 461,883 + Rru_A0384 0.65 +0.0 461,884 - Rru_A0384 0.65 +0.0 461,884 - Rru_A0384 0.65 -0.9 462,146 + +0.0 462,146 + +0.0 462,146 + +0.0 462,147 - +0.0 462,147 - +0.0 462,154 - +0.0 462,213 - +0.0 462,213 - +0.0 462,213 - -0.9 462,328 + +0.0 462,414 + +0.0 462,415 - +0.0 462,415 - -1.0 462,415 - -1.2 462,415 - -0.7 462,800 - Rru_A0385 0.15 +0.0 462,944 + Rru_A0385 0.23 -1.0
Or see this region's nucleotide sequence